FC872128

Overview
NameFC872128
Unique NameFC872128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNV 170          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNV 170          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNV 170          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNV 170          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNV 170          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNV 170          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 47/169 (27.81%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  203 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            M+ +   K + +GD  VGK+CLL+ +T   F   +  T+   F A +V ++G  + L +WDTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + + H +  + I+L+G K DL   +           +   +GE   +  G   ++E S+KT  NV+
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAKTACNVE 157          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 47/169 (27.81%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  203 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            M+ +   K + +GD  VGK+CLL+ +T   F   +  T+   F A +V ++G  + L +WDTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + + H +  + I+L+G K DL   +           +   +GE   +  G   ++E S+KT  NV+
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAKTACNVE 157          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RB27A_HUMAN (Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDK 580
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR 141          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RB27A_CANFA (Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDK 580
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR 141          
The following BLAST results are available for this feature:
BLAST of FC872128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5A_PIG1.084e-1332.30Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE1.084e-1332.30Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA1.084e-1332.30Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN1.084e-1332.30Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA1.084e-1332.30Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN1.084e-1332.30Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB2B_MOUSE1.084e-1327.81Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN1.084e-1327.81Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RB27A_HUMAN1.415e-1336.09Ras-related protein Rab-27A OS=Homo sapiens GN=RAB... [more]
RB27A_CANFA1.415e-1336.09Ras-related protein Rab-27A OS=Canis familiaris GN... [more]

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Properties
Property NameValue
Genbank descriptionC05701A01SK AbsCOv1 Citrus clementina cDNA clone C05701A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872128 ID=FC872128; Name=FC872128; organism=Citrus clementina; type=EST; length=706bp
CGGCCGGGGGCTGGCAAGATTGGTTCGCTCAACGAACGCTTCAACGGCAT
AATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCGAT
CGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCTCT
GAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAATAA
AAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGCT
GTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTAC
GGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCA
ATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGAT
TATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCT
TGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGT
GGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGTT
GGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGACCATCC
AGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTGA
TTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTG
AAGGCA
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