FC872128

Overview
NameFC872128
Unique NameFC872128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_DROPS (Cdc42 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.019e-48
Identity = 90/163 (55.21%), Postives = 121/163 (74.23%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RACF1_DICDI (Rho-related protein racF1 OS=Dictyostelium discoideum GN=racF1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.726e-48
Identity = 93/163 (57.06%), Postives = 121/163 (74.23%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN+ AN+++ G   +LGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS+AS+ENV+ KW  E+ H+APGVPIILVGTK D+R+D      +       +   +G E  K I A  Y+E S+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCMLISYTTNGFPSEYIPTVFDNYCANLMLEGKPYSLGLWDTAGQEDYDRLRPLSYPHTDVFLICFSIISQASFENVTTKWFKEVNHHAPGVPIILVGTKQDIRNDNDSIKKLKEKNIELVPYEKGLEKAKEINA-IYLEASALTQRGIK 165          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_RAT (Cell division control protein 42 homolog OS=Rattus norvegicus GN=Cdc42 PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 89/163 (54.60%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_PIG (Cell division control protein 42 homolog OS=Sus scrofa GN=CDC42 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 89/163 (54.60%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_MOUSE (Cell division control protein 42 homolog OS=Mus musculus GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 89/163 (54.60%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_HUMAN (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 89/163 (54.60%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_CHICK (Cell division control protein 42 homolog OS=Gallus gallus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 89/163 (54.60%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_CANFA (Cell division control protein 42 homolog OS=Canis familiaris GN=CDC42 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 89/163 (54.60%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_BOVIN (Cell division control protein 42 homolog OS=Bos taurus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 89/163 (54.60%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RACA_DICDI (Rho-related protein racA OS=Dictyostelium discoideum GN=racA PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47
Identity = 90/161 (55.90%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IK V VGDGAVGK+CLLI+YT+N FP +YVPTVFDN+SANV+++G   NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S+AS+EN+  KW PE+ H+AP +PI+LVGTK DLR      +  P    +S A+   L + +G   Y+E S+  Q N++
Sbjct:    4 IKLVVVGDGAVGKSCLLIAYTTNAFPGEYVPTVFDNYSANVMIDGKPFNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSRASFENIRAKWYPEILHHAPNIPIVLVGTKNDLRGHHD--LKRP---EVSAAEANNLVRELGFSGYVETSALLQTNLR 159          
The following BLAST results are available for this feature:
BLAST of FC872128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC42_DROPS3.019e-4855.21Cdc42 homolog OS=Drosophila pseudoobscura pseudoob... [more]
RACF1_DICDI6.726e-4857.06Rho-related protein racF1 OS=Dictyostelium discoid... [more]
CDC42_RAT8.784e-4854.60Cell division control protein 42 homolog OS=Rattus... [more]
CDC42_PIG8.784e-4854.60Cell division control protein 42 homolog OS=Sus sc... [more]
CDC42_MOUSE8.784e-4854.60Cell division control protein 42 homolog OS=Mus mu... [more]
CDC42_HUMAN8.784e-4854.60Cell division control protein 42 homolog OS=Homo s... [more]
CDC42_CHICK8.784e-4854.60Cell division control protein 42 homolog OS=Gallus... [more]
CDC42_CANFA8.784e-4854.60Cell division control protein 42 homolog OS=Canis ... [more]
CDC42_BOVIN8.784e-4854.60Cell division control protein 42 homolog OS=Bos ta... [more]
RACA_DICDI1.498e-4755.90Rho-related protein racA OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC05701A01SK AbsCOv1 Citrus clementina cDNA clone C05701A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872128 ID=FC872128; Name=FC872128; organism=Citrus clementina; type=EST; length=706bp
CGGCCGGGGGCTGGCAAGATTGGTTCGCTCAACGAACGCTTCAACGGCAT
AATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCGAT
CGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCTCT
GAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAATAA
AAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGCT
GTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTAC
GGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCA
ATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGAT
TATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCT
TGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGT
GGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGTT
GGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGACCATCC
AGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTGA
TTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTG
AAGGCA
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