FC872141

Overview
NameFC872141
Unique NameFC872141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   13 MEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRM 195
            +EDLIHEI TVGPHFKEAN FLW F            R  ++  GD GNRED IN+L++RM
Sbjct:  187 VEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGNREDLINDLVKRM 247          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   13 MEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRM 195
            +EDLIHEI TVGPHFKEAN FLW F            R  ++  GD GNRED IN+L++RM
Sbjct:  187 VEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGNREDLINDLVKRM 247          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.073e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   13 MEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIRRM 195
            +EDLIHEI TVGP+FK+A NF+WPF            +  H++EGGDAG R+++IN L+R+M
Sbjct:  189 IEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKM 250          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.122e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   13 MEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIRRM 195
            +EDLIHEI TVGP+FK+A NFLWPF            +  H++EGGDAG R+++IN L+++M
Sbjct:  188 VEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKM 249          
The following BLAST results are available for this feature:
BLAST of FC872141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL72_PARTE3.688e-1355.7460S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE3.688e-1355.7460S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7C_SCHPO1.073e-1251.6160S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL7B_SCHPO3.122e-1251.6160S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC05701B03SK AbsCOv1 Citrus clementina cDNA clone C05701B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872141 ID=FC872141; Name=FC872141; organism=Citrus clementina; type=EST; length=517bp
CGGCCGGGCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCC
TCACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTCAAGGCAC
CATTGGGTGGCCTGAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGAT
GCAGGAAACCGTGAAGATTACATCAATGAGCTCATCAGAAGGATGAACTA
GGCTTCTGCAGAATATCCTACCCCTTTTGAAGAAGTTTTGATGTGATCAA
TATCTTAAATTTTGGCTTTTAGTGTTTCCTATTATTCCCAGCCTTTTCCC
TGGAAGTTAAGTAGAAACTTTCTTACTTTTTATAACAGTGACAGTGTTGT
TATTTTGGCTTCAGACTGGATTATCATTCCAAATTTTATTTTTTGTTTTC
ATGTGTTTTAGTTTCAGTTATGAAAGTGGCGGATCTGTTTTGAAAAAAAA
AAAAAAAAAAAAAAAAAAANTTTTGGGGGCCCCCCGGCCCAATTAATTTT
TAATTTGGAAAAATTTT
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