FC872143

Overview
NameFC872143
Unique NameFC872143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig157 contig Ccv1_Contig157:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872143 vs. ExPASy Swiss-Prot
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis GN=RPL24 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 1
Query:   40 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAARE 360
            +K E+  FSGAKIYPG+G  F+R DS++F F +SK    FH R  P ++ WT +YR+ HKK I  E  +K+ R + K   R++VGA+LE+I++RR+ KPEVR A R+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQRD 106          
BLAST of FC872143 vs. ExPASy Swiss-Prot
Match: RL24A_YEAST (60S ribosomal protein L24-A OS=Saccharomyces cerevisiae GN=RPL24A PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   40 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 369
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKL 109          
BLAST of FC872143 vs. ExPASy Swiss-Prot
Match: RL24B_YEAST (60S ribosomal protein L24-B OS=Saccharomyces cerevisiae GN=RPL24B PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   40 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 369
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L
Sbjct:    1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKL 109          
BLAST of FC872143 vs. ExPASy Swiss-Prot
Match: RL24_NEUCR (60S ribosomal protein L24 OS=Neurospora crassa GN=rpl-24 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   61 FSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 369
            FSG +IYPGKG  ++R DS++F F N K +  F  R  P ++ WT +YR+QHKK I+ E  KK+ R T K   R+IVGA+LEVI++RR+ +PE R AAR AA+
Sbjct:    8 FSGQRIYPGKGKLYVRGDSKIFRFQNGKSESLFLQRKNPRRIAWTVLYRRQHKKGISEEVAKKRSRRTVKA-QRAIVGASLEVIKERRSMRPEARSAARLAAI 109          
BLAST of FC872143 vs. ExPASy Swiss-Prot
Match: RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   40 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 369
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of FC872143 vs. ExPASy Swiss-Prot
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   40 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 369
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of FC872143 vs. ExPASy Swiss-Prot
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   40 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 369
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of FC872143 vs. ExPASy Swiss-Prot
Match: RL24_HUMAN (60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   40 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 369
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of FC872143 vs. ExPASy Swiss-Prot
Match: RL24_FELCA (60S ribosomal protein L24 OS=Felis catus GN=RPL24 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   40 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 369
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of FC872143 vs. ExPASy Swiss-Prot
Match: RL24_BOVIN (60S ribosomal protein L24 OS=Bos taurus GN=RPL24 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   40 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 369
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
The following BLAST results are available for this feature:
BLAST of FC872143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL24_KLULA3.986e-2448.6060S ribosomal protein L24 OS=Kluyveromyces lactis ... [more]
RL24A_YEAST6.799e-2450.0060S ribosomal protein L24-A OS=Saccharomyces cerev... [more]
RL24B_YEAST8.880e-2450.0060S ribosomal protein L24-B OS=Saccharomyces cerev... [more]
RL24_NEUCR2.584e-2351.4660S ribosomal protein L24 OS=Neurospora crassa GN=... [more]
RL24_RAT4.407e-2348.6560S ribosomal protein L24 OS=Rattus norvegicus GN=... [more]
RL24_MOUSE4.407e-2348.6560S ribosomal protein L24 OS=Mus musculus GN=Rpl24... [more]
RL24_MACFA4.407e-2348.6560S ribosomal protein L24 OS=Macaca fascicularis G... [more]
RL24_HUMAN4.407e-2348.6560S ribosomal protein L24 OS=Homo sapiens GN=RPL24... [more]
RL24_FELCA4.407e-2348.6560S ribosomal protein L24 OS=Felis catus GN=RPL24 ... [more]
RL24_BOVIN4.407e-2348.6560S ribosomal protein L24 OS=Bos taurus GN=RPL24 P... [more]

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Properties
Property NameValue
Genbank descriptionC05701B05SK AbsCOv1 Citrus clementina cDNA clone C05701B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872143 ID=FC872143; Name=FC872143; organism=Citrus clementina; type=EST; length=712bp
TTGAAGCCGCATCCAGCAACACCATCAGAAACCATGGTTCTCAAGACTGA
ACTTTGCAAATTCAGCGGTGCCAAGATATACCCTGGTAAGGGTATCAGAT
TTATTCGTTCAGACTCTCAGGTTTTCCTCTTTGCCAATTCTAAATGCAAG
AGGTACTTCCACAACCGATTGAAGCCATCGAAGCTTACATGGACAGCCAT
GTACAGGAAACAGCACAAGAAGGACATTGCTGCTGAGGCAGTTAAGAAGA
AGCGTCGTGCCACTAAGAAGCCCTATTCAAGATCTATAGTTGGTGCCACC
TTGGAAGTTATCCAGAAGAGAAGAACTGAGAAGCCAGAAGTCCGAGATGC
TGCACGGGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAGAAGACTA
AGGATGAAAAGAAGGCAAAGAAAGCGGAGACGATGTCCAAGTCACAGAAG
TCTCAAGTCAAAAGTAGCGTGCCTAAGGGTGCCGCCCCGAAGGGCCCCAA
GCTAGGCGGTGGTGGTGGAAAGCGGTGAATTGCTTAGTCTTTTCAAATCT
GCGGATGAGTATAAACAATTAGAACTTAATTTCATGTTTCTTGTATGGAT
TGATCAATCATGTAGACCAGATTTTTTTGTGGTTTTTGTTTATGGTTTTG
CATTGGGAGTTAATTTGCCTTTTACTTAATTGAAATCAAGTTTTCTCAAG
CACTAAAAAAAA
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