FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.667e-32
Identity = 69/161 (42.86%), Postives = 100/161 (62.11%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 465
            LY+D   +  + E++ GA    D+  ++ + DIV +N PL   ++G+ + + +   KKG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AMTPH SG+ IDAQ+RYA G K++L+ +F  + D+  Q+ I+  G+
Sbjct:  192 LYYDYQSLSKEAEEKVGARRVHDIKELVAQADIVTINCPLHAGSKGLVNAELLKHFKKGAWLVNTARGAICVAEDVAAAVKSGQLRGYGGDVWFPQPAPKDHPWRSMANKYGAGNAMTPHYSGSVIDAQVRYAQGTKNILESFFTQKFDYRPQDIILLNGK 352          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.772e-20
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L K DIV ++ PLT++T  + +++R+ KMKK   ++N ARG ++DT+A+V A   G IAG + DV+  +P P +HP     N  + PH++  TI+A+ R A      L    KGE
Sbjct:  197 DLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPPNHPLTKFDNVVLAPHIASATIEARQRMAELAARNLIAVLKGE 316          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.699e-19
Identity = 55/145 (37.93%), Postives = 87/145 (60.00%), Query Frame = 1
Query:   25 DPQLEKETGAEF---EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYI 450
            DP L +E   +        + +L   DI+ V+TPLT++T+G+ +K+ IAK KKGV ++N ARG I+D  A+++A  +GH+AG + DV+  +P P D+     P    TPH+  +T +AQL  AA V + + ++ KG   PV + I
Sbjct:  168 DPFLTEERAKKIGVNSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLEALENGHVAGAALDVFEVEP-PVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQFAKG--LPVMSAI 309          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18
Identity = 49/145 (33.79%), Postives = 80/145 (55.17%), Query Frame = 1
Query:   25 DPQLEKETGAEFEE---DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYI 450
            DP + KE   +      D DT+L   D++ V+ P T++T G+  K +  KMK GV++VN ARG I+D  A+ +A  +G +A  + DV+  +P   D+P   + N   TPH++ +T +AQL     + + +    KG   PV+N +
Sbjct:  169 DPFVSKERAEQIGVKLVDFDTLLASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYEAIKAGKVAAAALDVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVGMIIAEDIVNMAKG--LPVRNAV 311          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 53/154 (34.42%), Postives = 86/154 (55.84%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP--VQNYIVK 456
            +YH R +   ++EKE GAE+   L+ +L + DI+ ++ PLT++TR +  +  +  MKK  ++VN  RGAI+DT A+V A   G IA  + DV+  +P   +HP     N  + PH +  T + +LR A    + L  + +G+  P  V   +VK
Sbjct:  178 IYHSRSRKR-EIEKELGAEYRS-LEDLLRESDILSIHLPLTDETRHLIGESELKLMKKTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLTAFKNVVLAPHAASATRETRLRMAMMAAENLVAFAQGKVPPNLVNREVVK 329          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17
Identity = 50/154 (32.47%), Postives = 86/154 (55.84%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP--VQNYIVK 456
            LY+D ++ +   EKE G E+   L+ +L + D V ++ PLTE+T  M  ++++ +MK+  ++VN +RG ++D +A+  A   G IAG   DV+  +P P D P   + N  + PH +  + + + R A  V + L  + +GE  P  V   +VK
Sbjct:  174 LYYDSIRRE-DFEKELGVEYVP-LEKLLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIAGAGLDVFEQEPIPPDDPLLKLENVVLAPHAASASHETRSRMAEMVAENLIAFKRGEIPPNLVNQEVVK 325          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.099e-17
Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   25 DPQLEKET----GAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DP + KE     G E  +D++ +  + D + ++ PLT KTR +  +++IA MKK  +IVN ARG ++D +A+ +A   G I   + DV+  +P PKD+P   + N   TPH   +T +AQ      V + + +  +GE
Sbjct:  169 DPYIPKEVAESMGVELVDDINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYEALKEGKIRAAALDVFEEEP-PKDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAEQIKKVLRGE 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ESCF3 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ghrB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 49/141 (34.75%), Postives = 73/141 (51.77%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 423
            LY+ R +  PQ E+   A +  DLDT+L + D V +  PLTE+T  +F  ++ AKMK   + +N  RG ++D +A++ A   G I     DV+  +P P D P   MPN    PH+   T + +   AA   D L    +G
Sbjct:  173 LYNAR-RQHPQAEERFNARYC-DLDTLLQEADFVCLILPLTEETHHLFGAEQFAKMKSSAIFINAGRGPVVDEKALISALQKGEIHAAGLDVFEREPLPVDSPLLAMPNVVALPHIGSATHETRYNMAACAVDNLIAALQG 311          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 51/141 (36.17%), Postives = 75/141 (53.19%), Query Frame = 1
Query:   10 DRVKMDPQLEKETGAEFE---EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 423
            D +  DP + KE   E      DL+T+L + DIV ++ PLT +TR +  +D    MK    IVN ARG I+D  A+  A   G IAG + DV+  +P P+  P   + N  +TPH+  +T +AQ   A  V + +   F+G
Sbjct:  166 DIMVYDPYISKEAAEEMGVTVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDALYRALKDGEIAGAALDVFEEEP-PEGSPLLELENVVLTPHIGASTSEAQRDAAIIVANEIKTVFQG 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 49/142 (34.51%), Postives = 83/142 (58.45%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LY+ R +  P++EKE  AEF+  LD +L + D VV+  PL ++T  M +++R+  MK+  +++N ARG ++DT+A++ A   G IAG   DV+  +P   +  +  + N  +TPH+   T  A+   A  V + L  + +GE
Sbjct:  178 LYYSRTRK-PEVEKELNAEFKP-LDELLRESDFVVLAVPLNKETYHMINEERLKMMKRTAILINVARGKVIDTKALIKALKEGWIAGAGLDVYEEEPYYNEELFS-LDNVVLTPHIGSATFGAREGMAKLVAENLIAFKRGE 316          
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
FDH_PICAN7.667e-3242.86Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
GYAR_THEPD1.772e-2040.83Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
SERA_BACSU5.699e-1937.93D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_ARCFU8.230e-1833.79D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
GYAR_AERPE1.075e-1734.42Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
GYAR_KORCO6.967e-1732.47Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
SERA_METJA9.099e-1734.06D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
GHRB_ESCF31.188e-1634.75Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
SERA_METTH2.647e-1636.17D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
GYAR_PYRAB2.647e-1634.51Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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