FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_PIG (D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   25 DPQLEKETGAEF---EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 378
            DP +  E  A F   +  L+ + P CD + V+TPL   T G+ +    A  KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D            PH+  +T +AQ R
Sbjct:  175 DPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHEKVISCPHLGASTREAQSR 294          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_HAEIN (D-3-phosphoglycerate dehydrogenase OS=Haemophilus influenzae GN=serA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 35/105 (33.33%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH----PWRYMPNQAMTPHVSGTTIDAQ 372
            L+ +L  CD+V ++ P    T+ + +  RIA++K+G +++N ARG ++D  A+  A   G + G + DV+  +PA  +     P R   N  +TPH+ G+T +AQ
Sbjct:  198 LEELLSSCDVVSLHVPELPSTKNLMNVARIAQLKQGAILINAARGTVVDIDALAQALKDGKLQGAAIDVFPVEPASINEEFISPLREFDNVILTPHIGGSTAEAQ 302          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_SCHPO (Putative D-3-phosphoglycerate dehydrogenase OS=Schizosaccharomyces pombe GN=SPCC364.07 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA--PKD------HPW----RYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 414
            L  +L + D V ++ P + +T+ M      A MK+G  ++N +RG ++D  A+VDA  SG IAG + DV+  +PA   KD      + W     +  N  +TPH+ G+T +AQ      V + L RY
Sbjct:  241 LPELLHRADFVSLHVPASPETKNMISSKEFAAMKEGSYLINASRGTVVDIPALVDASKSGKIAGAAIDVYPSEPAGNGKDKFVDSLNSWTSELTHCKNIILTPHIGGSTEEAQYNIGIEVSEALTRY 367          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: Y2355_CORGL (Uncharacterized protein Cgl2355/cg2587 OS=Corynebacterium glutamicum GN=Cgl2355 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   88 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 357
            + D+ V+  PLT+ T  + + + + KMK   ++VN  RG +++T  +VDA ++G IAG + DV +P+P P  HP   M N  +TPH + T
Sbjct:  180 EADVFVLILPLTDATYQIVNAETLGKMKPSAVVVNVGRGPLINTDDLVDALNNGTIAGAALDVTDPEPLPDSHPLWEMDNVVITPHTANT 269          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL6 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6 GN=ghrB PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 38/120 (31.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            +LDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 NLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: YPRB2_CORML (Uncharacterized protein in proB 3'region OS=Corynebacterium melassecola PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   88 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 357
            + D+ V+  PLT+ T  + + + + KMK   ++VN  RG +++T  +VDA ++G IAG + DV +P+P P  HP   M N  +TPH + T
Sbjct:  180 EADVFVLILPLTDATYQIVNAETLGKMKPSAVLVNVGRGPLINTDDLVDALNNGTIAGAALDVTDPEPLPDSHPLWEMDNVVITPHTANT 269          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: TKRA_DICDI (Probable 2-ketogluconate reductase OS=Dictyostelium discoideum GN=tkrA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   64 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 372
            +DLDT+L   D + V  P +++T+  F   + +KMK   + +N  RG  +D  A++DA  +G IAG   DV+  +P  KD     + N  + PH+  +TI+ Q
Sbjct:  201 QDLDTILSTSDFICVVLPGSQETKHFFSFGQFSKMKNSAIFINAGRGMTVDEVALIDALETGKIAGAGLDVFEKEPLNKDSKLLTLDNIVLLPHIGTSTIETQ 303          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL5 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 38/120 (31.67%), Postives = 59/120 (49.17%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++  KMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETYHLFGAEQFGKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: DHGY_METEA (Glycerate dehydrogenase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=hprA PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 39/123 (31.71%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW---RYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DL+T+L + D++ ++ PLT  T+ M   +++ KMK+  +++N ARG ++D  A++ A   G I G   DV   +P PKD        +PN  +TPHV+  + +A    A  + D ++ +  G+
Sbjct:  186 DLETILTQSDVITLHVPLTPDTKNMIGAEQLKKMKRSAILINTARGGLVDEAALLQALKDGTIGGAGFDVVAQEP-PKDGNILCDADLPNLIVTPHVAWASKEAMQILADQLVDNVEAFVAGK 307          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: DHGY_HYPME (Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 42/142 (29.58%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    4 YHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 429
            Y D  +     E    A F + LD++L       +N P T +TR  F+K  I  + +G ++VN ARG ++D + VV A  +G +A    DV+  +P   +  +  +PN  + PH+      A+   A    D++D  F G D
Sbjct:  176 YFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINE-GYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGAD 316          
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
SERA_PIG1.776e-1236.36D-3-phosphoglycerate dehydrogenase OS=Sus scrofa G... [more]
SERA_HAEIN1.776e-1233.33D-3-phosphoglycerate dehydrogenase OS=Haemophilus ... [more]
SERA_SCHPO2.319e-1233.86Putative D-3-phosphoglycerate dehydrogenase OS=Sch... [more]
Y2355_CORGL3.029e-1237.78Uncharacterized protein Cgl2355/cg2587 OS=Coryneba... [more]
GHRB_ECOL63.029e-1231.67Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
YPRB2_CORML3.956e-1237.78Uncharacterized protein in proB 3'region OS=Coryne... [more]
TKRA_DICDI3.956e-1233.98Probable 2-ketogluconate reductase OS=Dictyosteliu... [more]
GHRB_ECOL53.956e-1231.67Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
DHGY_METEA3.956e-1231.71Glycerate dehydrogenase OS=Methylobacterium extorq... [more]
DHGY_HYPME3.956e-1229.58Glycerate dehydrogenase OS=Hyphomicrobium methylov... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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