FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: YN14_YEAST (Putative 2-hydroxyacid dehydrogenase YNL274C OS=Saccharomyces cerevisiae GN=YNL274C PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 291
            +YH+R ++    E+E G E+    +  L + DIV VN PL   T  + + + I KMK GV+IVN ARGA++D QA+ DA  SG I     DV+  +P
Sbjct:  191 IYHNRHQLPS--EEEHGCEYV-GFEEFLKRSDIVSVNVPLNHNTHHLINAETIEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEP 284          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_SHIFL (D-3-phosphoglycerate dehydrogenase OS=Shigella flexneri GN=serA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   64 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR----YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 414
            + L  +L   D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P+        N  +TPH+ G+T +AQ      V   L +Y
Sbjct:  195 QHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 315          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_ECOLI (D-3-phosphoglycerate dehydrogenase OS=Escherichia coli (strain K12) GN=serA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   64 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR----YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 414
            + L  +L   D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P+        N  +TPH+ G+T +AQ      V   L +Y
Sbjct:  195 QHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 315          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_ECOL6 (D-3-phosphoglycerate dehydrogenase OS=Escherichia coli O6 GN=serA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   64 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR----YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 414
            + L  +L   D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P+        N  +TPH+ G+T +AQ      V   L +Y
Sbjct:  195 QHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 315          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_ECO57 (D-3-phosphoglycerate dehydrogenase OS=Escherichia coli O157:H7 GN=serA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   64 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR----YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 414
            + L  +L   D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P+        N  +TPH+ G+T +AQ      V   L +Y
Sbjct:  195 QHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 315          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLU (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 37/120 (30.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLD++L + D V +  PLT++T  +F  ++  KMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDSLLQESDFVCLILPLTDETYHLFGAEQFGKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: DDH_ZYMMO (2-hydroxyacid dehydrogenase homolog OS=Zymomonas mobilis GN=ddh PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 31/88 (35.23%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   25 DPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 288
            DP+L K+ G  F   LD ++   DI+ ++ PLT +   M +++ +A+ KKG  +VN +RG ++DT+AV+ +  + H+ GY+ DV+  +
Sbjct:  179 DPELAKKVGFRFTS-LDEVIETSDIISLHCPLTPENHHMINEETLARAKKGFYLVNTSRGGLVDTKAVIKSLKAKHLGGYAADVYEEE 265          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_YEAST (D-3-phosphoglycerate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=SER3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 39/127 (30.71%), Postives = 63/127 (49.61%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD--------HPWR----YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 414
            LD +L K D V ++ P T +T  M    + A MK G  ++N +RG ++D  +++ A  +  IAG + DV+  +PA           + W      +PN  +TPH+ G+T +AQ      V   L +Y
Sbjct:  244 LDELLNKSDFVTLHVPATPETEKMLSAPQFAAMKDGAYVINASRGTVVDIPSLIQAVKANKIAGAALDVYPHEPAKNGEGSFNDELNSWTSELVSLPNIILTPHIGGSTEEAQSSIGIEVATALSKY 370          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SER33_YEAST (D-3-phosphoglycerate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=SER33 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 39/127 (30.71%), Postives = 63/127 (49.61%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD--------HPWR----YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 414
            LD +L K D V ++ P T +T  M    + A MK G  ++N +RG ++D  +++ A  +  IAG + DV+  +PA           + W      +PN  +TPH+ G+T +AQ      V   L +Y
Sbjct:  244 LDELLNKSDFVTLHVPATPETEKMLSAPQFAAMKDGAYVINASRGTVVDIPSLIQAVKANKIAGAALDVYPHEPAKNGEGSFNDELNSWTSELVSLPNIILTPHIGGSTEEAQSSIGIEVATALSKY 370          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GRHPR_MOUSE (Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 41/136 (30.15%), Postives = 64/136 (47.06%), Query Frame = 1
Query:   28 PQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 435
            PQ   E  AEF   +  +  + D +VV+  LT  T G+  KD   KMK   + +N +RG +++ + +  A +SG IA    DV  P+P P  HP   + N  + PH+   T   +   +    + L    +GE  P
Sbjct:  189 PQEAAEFQAEFVP-IAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVNQEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKTRNTMSLLAANNLLAGLRGEAMP 323          
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
YN14_YEAST8.813e-1241.24Putative 2-hydroxyacid dehydrogenase YNL274C OS=Sa... [more]
SERA_SHIFL8.813e-1232.23D-3-phosphoglycerate dehydrogenase OS=Shigella fle... [more]
SERA_ECOLI8.813e-1232.23D-3-phosphoglycerate dehydrogenase OS=Escherichia ... [more]
SERA_ECOL68.813e-1232.23D-3-phosphoglycerate dehydrogenase OS=Escherichia ... [more]
SERA_ECO578.813e-1232.23D-3-phosphoglycerate dehydrogenase OS=Escherichia ... [more]
GHRB_ECOLU1.151e-1130.83Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
DDH_ZYMMO1.151e-1135.232-hydroxyacid dehydrogenase homolog OS=Zymomonas m... [more]
SERA_YEAST2.564e-1130.71D-3-phosphoglycerate dehydrogenase 1 OS=Saccharomy... [more]
SER33_YEAST2.564e-1130.71D-3-phosphoglycerate dehydrogenase 2 OS=Saccharomy... [more]
GRHPR_MOUSE4.374e-1130.15Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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