FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig318 contig Ccv1_Contig318:117..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15
Identity = 55/154 (35.71%), Postives = 86/154 (55.84%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP--VQNYIVK 456
            LY+ R +  P+ EKE GAEF   L+ +L + D VV+  PLT++T+ M +++R+  MKK  ++VN ARG ++DT+A++ A   G IAG   DV+  +P   +  +  + N  + PH+   T  A+   A  V   L  +  GE  P  V   +VK
Sbjct:  177 LYYSRSRK-PEAEKELGAEFRS-LEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAILVNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFS-LKNVVLAPHIGSATYGAREGMAELVARNLIAFKNGEVPPTLVNKEVVK 327          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP7 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LY+ R +  PQ E+   A +  DLDT+L + D V +  PL+E+T  +F + + AKMK   + +N  RG ++D QA++ A  +G I     DV+  +P  KD P   +PN    PH+   T + +   AA   D L
Sbjct:  173 LYNAR-RQHPQAEERFNARYC-DLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFINAGRGPVVDEQALIAALQNGEIHAAGLDVFEHEPLAKDSPLLSLPNVVALPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP3 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae (strain 342) GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LY+ R +  PQ E+   A +  DLDT+L + D V +  PL+E+T  +F + + AKMK   + +N  RG ++D QA++ A  +G I     DV+  +P  KD P   +PN    PH+   T + +   AA   D L
Sbjct:  173 LYNAR-RQHPQAEERFNARYC-DLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFINAGRGPVVDEQALIAALQAGEIHAAGLDVFEHEPLAKDSPLLTLPNVVALPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   16 VKMDPQLEKETGAEFEEDL---DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 435
            V  DP +     A+   +L   D +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+     DV+  +P   D P   +    +TPH+  +T +AQ R    V + +     GE  P
Sbjct:  168 VAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 309          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   16 VKMDPQLEKETGAEFEEDL---DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 435
            V  DP +     A+   +L   D +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+     DV+  +P   D P   +    +TPH+  +T +AQ R    V + +     GE  P
Sbjct:  168 VAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 309          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   16 VKMDPQLEKETGAEFEEDL---DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 435
            +  DP +     A+   +L   D +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA  SGH+     DV+  +P   D P   +    +TPH+  +T +AQ R    V + +     GE  P
Sbjct:  168 IAYDPYVAPARAAQLGIELMSFDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEVALADAVRSGHVRAAGLDVFATEPC-TDSPLFELSQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 309          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LY+ R +   Q EKE GAE+   L+ +L + D V++  PLT++T  M +++R+  MK   ++VN ARG ++DT+A++ A   G IAG   DV+  +P   +  +  + N  +TPH+   T +A+   A  V   L  + +GE
Sbjct:  177 LYYSRTRKS-QAEKELGAEYRP-LEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPYYNEELFS-LDNVVLTPHIGSATFEAREAMAELVARNLIAFKRGE 315          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: Y1556_HAEIN (Putative 2-hydroxyacid dehydrogenase HI1556 OS=Haemophilus influenzae GN=HI1556 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   73 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 414
            D +L + DIV ++ PLTE T+ + + + ++KMKKG  ++N  RG ++D  A+VDA  +GH+ G + DV   +P  KD+P     + MPN  +TPH++  +  A       V   ++ +
Sbjct:  191 DEVLKQADIVTLHCPLTETTKDLINAETLSKMKKGAFLINTGRGPLIDELALVDALKTGHLGGAALDVMVKEPPEKDNPLILAAKTMPNLIITPHIAWASDSAVTTLVGKVMQNIEEF 308          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LY+ R +  P++EKE GAEF   LD +L + D VV+  PLT++T  M +++R+  MK   ++VN ARG ++DT+A+V A   G IAG   DV+  +P   +  +  + N  + PH+   T  A+   A  V   L  +  GE
Sbjct:  177 LYNSRTRK-PEVEKELGAEFMP-LDELLKESDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELFS-LDNVVLAPHIGSATYGAREGMAELVARNLIAFKNGE 315          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_CITK8 (Glyoxylate/hydroxypyruvate reductase B OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ghrB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LY+ R +  P+ E+   A +  DLDT+L   D V +  PLTE+T  +F   + AKMK   + +N  RG ++D  A++ A  SG I     DV+  +P P D P   +PN    PH+   T + +   AA   D L    +G+
Sbjct:  173 LYNAR-RHHPEAEERFNARYC-DLDTLLQAADFVCLILPLTEETHHLFGAAQFAKMKSSAIFINAGRGPVVDETALIAALQSGEIHAAGLDVFEQEPLPVDSPLLSLPNVVALPHIGSATHETRYNMAACAVDNLIDALQGK 312          
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
GYAR_PYRKO1.006e-1535.71Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
GHRB_KLEP71.006e-1534.81Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
GHRB_KLEP31.006e-1534.81Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
SERA_MYCTU1.716e-1533.57D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO1.716e-1533.57D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCLE2.241e-1533.57D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_PYRFU2.241e-1534.51Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
Y1556_HAEIN2.927e-1533.90Putative 2-hydroxyacid dehydrogenase HI1556 OS=Hae... [more]
GYAR_THEON2.927e-1536.62Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GHRB_CITK83.823e-1533.80Glyoxylate/hydroxypyruvate reductase B OS=Citrobac... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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