FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig318 contig Ccv1_Contig318:117..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.993e-15
Identity = 45/142 (31.69%), Postives = 80/142 (56.34%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            +Y+ R +  P+ E+E GAE+  D +T+L + D + ++ PLT++T  M  +  +  MK   +++N +RGA++DT A++ A   G IAG   DV+  +P   +  ++ + N  + PH+   T +A+   A  V   L  + KGE
Sbjct:  177 IYYSRTRK-PEAEEEIGAEYV-DFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFK-LKNVVLAPHIGSATHEAREGMAELVAKNLIAFAKGE 315          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_PECCP (Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.993e-15
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D + +  PLT +T  +  ++++AKMK   +++N  RGA++D  A+ +A   G I G   DV+  +P P D P   +PN    PH+   T + +   AA   D L     GE
Sbjct:  189 DLDTLLAESDFLCITLPLTTETHHLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQGAGLDVFVKEPLPVDSPLLDLPNVVALPHIGSATHETRYDMAACAVDNLIAALSGE 308          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 47/142 (33.10%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LY+ R + + ++E+E  AEF+  L+ +L + D VV+  PLT +T  + +++R+  MKK  +++N ARG ++DT A+V A   G IAG   DV+  +P   +  ++ + N  +TPH+   +  A+   A  V   L  + +GE
Sbjct:  177 LYYSRTRKE-EVERELNAEFKP-LEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGE 315          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SERP5 (Glyoxylate/hydroxypyruvate reductase B OS=Serratia proteamaculans (strain 568) GN=ghrB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.897e-14
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            DLDT+L + D + +  PLT++T  M  +D++AKMKK  +++N  RG ++D  A+++A  +G I     DV+  +P P   P   +PN    PH+   T + +   A    D L
Sbjct:  193 DLDTLLAESDFICITLPLTDETFHMISRDQLAKMKKSGILINAGRGPVVDEAALIEALQNGTIHAAGLDVFEKEPLPVSSPLLTLPNVVALPHIGSATHETRYGMAECAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ENTS8 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ghrB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.897e-14
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V V  PLT++T  M   ++  KMKK  + +N  RG ++D  A++ A  SG I     DV+  +P  KD P   M N    PH+   T + +   AA   D L     G+
Sbjct:  193 DLDTLLAESDFVCVILPLTDETHHMIGAEQFRKMKKSAIFINAGRGPVVDENALIAALQSGEIHAAGLDVFEQEPLSKDSPLLTMKNVVALPHIGSATHETRYNMAACAVDNLINALNGD 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ERWCT (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia carotovora subsp. atroseptica GN=ghrB PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.520e-14
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D + +  PLT +T  +  ++++AKMK   +++N  RGA++D  A+ +A   G I     DV+  +P P D P   +PN    PH+   T + +   AA   D L     G+
Sbjct:  189 DLDTLLAESDFLCITLPLTAETHHLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQAAGLDVFVKEPLPVDSPLLDLPNVVALPHIGSATHETRYDMAACAVDNLIAALSGQ 308          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 1
Query:   25 DPQLEKETGAEF---EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 378
            DP +  E  A F   +  L+ + P CD + V+TPL   T G+ +    A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T +AQ R
Sbjct:  175 DPIISPEVSASFGVQQLPLEQIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVCVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVNHENVISCPHLGASTKEAQSR 294          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_YERE8 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1
Query:   37 EKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            EK  GA     LDT+L + D + +  P+TE+T  M   +++AKMK   +++N  RG ++D QA++ A   G I     DV+  +P P + P   +PN    PH+   T + +   AA   D L
Sbjct:  184 EKRFGAR-RCSLDTLLAEVDFLCITLPMTEQTYHMIGPEQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFAQEPLPVESPLLKLPNVVAVPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 1
Query:   16 VKMDPQLEKETGAEF---EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 378
            V  DP +  E  A F   +  L+ + P CD + V+TPL   T G+ +    A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T +AQ R
Sbjct:  172 VGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSR 294          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   25 DPQLEKETGAEF---EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 378
            DP +  E  A F   +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T +AQ R
Sbjct:  175 DPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSR 294          
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
GYAR_THELI4.993e-1531.69Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
GHRB_PECCP4.993e-1534.17Glyoxylate/hydroxypyruvate reductase B OS=Pectobac... [more]
GYAR_PYRHO1.112e-1433.10Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
GHRB_SERP51.897e-1433.63Glyoxylate/hydroxypyruvate reductase B OS=Serratia... [more]
GHRB_ENTS81.897e-1435.00Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_ERWCT5.520e-1432.50Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
SERA_BOVIN7.210e-1437.19D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
GHRB_YERE87.210e-1433.33Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
SERA_RAT9.416e-1437.10D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]
SERA_PANTR9.416e-1437.19D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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