FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 1
Query:   16 VKMDPQLEKETGAEF---EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 378
            V  DP +  E  A F   +  L+ + P CD + V+TPL   T G+ +    A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T +AQ R
Sbjct:  172 VGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSR 294          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   25 DPQLEKETGAEF---EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 378
            DP +  E  A F   +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T +AQ R
Sbjct:  175 DPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSR 294          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   25 DPQLEKETGAEF---EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 378
            DP +  E  A F   +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T +AQ R
Sbjct:  175 DPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSR 294          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_YERPS (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LDT+L + D + +  P+TE+T  M  ++++AKMK   +++N  RG ++D QA++ A   G I     DV+  +P P D P   + N    PH+   T + +   AA   D L
Sbjct:  194 LDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_YERPP (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LDT+L + D + +  P+TE+T  M  ++++AKMK   +++N  RG ++D QA++ A   G I     DV+  +P P D P   + N    PH+   T + +   AA   D L
Sbjct:  194 LDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_YERPG (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LDT+L + D + +  P+TE+T  M  ++++AKMK   +++N  RG ++D QA++ A   G I     DV+  +P P D P   + N    PH+   T + +   AA   D L
Sbjct:  194 LDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_YERPE (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LDT+L + D + +  P+TE+T  M  ++++AKMK   +++N  RG ++D QA++ A   G I     DV+  +P P D P   + N    PH+   T + +   AA   D L
Sbjct:  194 LDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_YERPB (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LDT+L + D + +  P+TE+T  M  ++++AKMK   +++N  RG ++D QA++ A   G I     DV+  +P P D P   + N    PH+   T + +   AA   D L
Sbjct:  194 LDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_YERPA (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LDT+L + D + +  P+TE+T  M  ++++AKMK   +++N  RG ++D QA++ A   G I     DV+  +P P D P   + N    PH+   T + +   AA   D L
Sbjct:  194 LDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_YERP3 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LDT+L + D + +  P+TE+T  M  ++++AKMK   +++N  RG ++D QA++ A   G I     DV+  +P P D P   + N    PH+   T + +   AA   D L
Sbjct:  194 LDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305          
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
SERA_MOUSE9.416e-1437.10D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]
SERA_MACFA9.416e-1437.19D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_HUMAN9.416e-1437.19D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
GHRB_YERPS9.416e-1433.04Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPP9.416e-1433.04Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPG9.416e-1433.04Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPE9.416e-1433.04Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPB9.416e-1433.04Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPA9.416e-1433.04Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERP39.416e-1433.04Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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