FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: YEAA_SCHPO (Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Schizosaccharomyces pombe GN=SPACUNK4.10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ--AMTPHVSGTTIDAQLRYAAGV 393
            +YH+R  + P+ E E GAEF    D +L K D++ +N PL   TR +  K    KMK+G++IVN ARGA+MD  A+V+A   G +     DV+  +  PK HP   + N+   + PH+   +++ Q +    V
Sbjct:  183 VYHNRTPL-PEEEAE-GAEFVS-FDDLLAKSDVLSLNLPLNAHTRHIIGKPEFQKMKRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFEEE--PKIHP-GLLENEKVILLPHLGTNSLETQYKMECAV 309          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_YERPY (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LDT+L + D + +  P+TE+T  M  ++++AK+K   +++N  RG ++D QA++ A   G I     DV+  +P P D P   + N    PH+   T + +   AA   D L
Sbjct:  194 LDTLLAEADFLCITLPMTEQTYHMIGREQLAKIKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_YERPN (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 36/112 (32.14%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   70 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LDT+L + D + +  P+TE+T  M  ++++AKMK   +++N  RG ++D Q ++ A   G I     DV+  +P P D P   + N    PH+   T + +   AA   D L
Sbjct:  194 LDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQTLIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ENTAG (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter agglomerans GN=tkrA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 43/135 (31.85%), Postives = 70/135 (51.85%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 405
            LY+ R K   + E    A++  DLDT+L + D + ++ PLTE+T  M  ++++AKMK   +++N  RG ++D QA++ A     I     DV+  +P P D     +PN    PH+   T + +   A    D L
Sbjct:  172 LYNAR-KHHEEAESRFNAQYC-DLDTLLRESDFLCISLPLTEQTHHMIGREQLAKMKPSAILINAGRGPVVDEQALIAALKDKTIHAAGLDVFEQEPLPVDSELLTLPNVVALPHIGSATHETRYGMARDAVDNL 304          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_DICDI (D-3-phosphoglycerate dehydrogenase OS=Dictyostelium discoideum GN=serA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 37/120 (30.83%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 414
            D+ T+L   + V ++ P T++T G+  ++ I  MKKG  ++N +RG ++    + +A  SGH+AG + DV+  +P+     W    +  PN  +TPH+ G+T +AQ      V D++ ++
Sbjct:  196 DMKTLLENSNFVTLHVPDTKETVGLIGEEEINTMKKGSYLLNASRGKVVQIPHLANALRSGHLAGAAVDVYPEEPSANCKDWECELQKCPNTILTPHIGGSTEEAQEAIGLEVSDLIVQF 315          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ENT38 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sp. (strain 638) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 423
            +L+T+L + D V +  PLT++T  +  K    KMKK  + +N  RG ++D +A+++A   G I     DV+  +P P D P   M N    PH+   T + +   AA   D L     G
Sbjct:  193 ELETLLQEADYVCLILPLTDETHHLIGKAEFEKMKKSAIFINAGRGPVVDEKALIEALQKGEIHAAGLDVFEQEPLPVDSPLLTMSNVVSLPHIGSATHETRYNMAATAVDNLINALNG 311          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLC (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATYETRYGMAACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 41/127 (32.28%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY 381
            LYH+R +   + E   G ++ E LDT+L + D +++ TPLT++T  M  +     MK   + VN +RG  +D +A++ A   G I G   DV+  +P  +D+P   + N  + PH+   T  A++R+
Sbjct:  176 LYHNRHRKQ-ETEDSIGVKYAE-LDTLLEQSDFILLITPLTDETYHMIGEREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAGLDVYEKEPVTQDNPLLQLDNVTLLPHIGSAT--AKVRF 298          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 1
Query:   25 DPQLEKETGAEF---EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 378
            DP +  E  A F   +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+        N    PH+  +T +AQ R
Sbjct:  175 DPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRGRALVDHENVISCPHLGASTKEAQSR 294          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALTY (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhimurium GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
YEAA_SCHPO2.740e-1336.09Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Sc... [more]
GHRB_YERPY2.740e-1332.14Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPN2.740e-1332.14Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_ENTAG2.740e-1331.85Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
SERA_DICDI4.673e-1330.83D-3-phosphoglycerate dehydrogenase OS=Dictyosteliu... [more]
GHRB_ENT384.673e-1331.93Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_ECOLC4.673e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
TKRA_BACSU6.103e-1332.28Probable 2-ketogluconate reductase OS=Bacillus sub... [more]
SERA_PONAB6.103e-1336.36D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
GHRB_SALTY6.103e-1331.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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