FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig318 contig Ccv1_Contig318:117..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALTI (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhi GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALSV (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella schwarzengrund (strain CVM19633) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALPC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi C (strain RKS4594) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALNS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella newport (strain SL254) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALHS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella heidelberg (strain SL476) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALEP (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella enteritidis PT4 (strain P125109) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALDC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella dublin (strain CT_02021853) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALCH (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella choleraesuis GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALA4 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella agona (strain SL483) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG ++D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: YGDH_SCHPO (Putative 2-hydroxyacid dehydrogenase C1773.17c OS=Schizosaccharomyces pombe GN=SPBC1773.17c PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 345
            +YH+R +++ + EK  GA F    D +L   D++ +N PLT  T  +       KMK GV I+N ARGAI++  A + A  SG +A    DV+  +P P    W       + PH
Sbjct:  186 VYHNRNRLEAEEEKRLGASFVS-FDELLSSSDVISINCPLTPATHDLISTKEFEKMKDGVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFLNEPTPNKF-WLECDKVTIQPH 298          
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
GHRB_SALTI6.103e-1331.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALSV6.103e-1331.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALPC6.103e-1331.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALNS6.103e-1331.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALHS6.103e-1331.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALEP6.103e-1331.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALDC6.103e-1331.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALCH6.103e-1331.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALA46.103e-1331.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
YGDH_SCHPO7.971e-1334.78Putative 2-hydroxyacid dehydrogenase C1773.17c OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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