FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLI (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain K12) GN=ghrB PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312
[Close]
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECOK1 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O1:K1 / APEC GN=ghrB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312
[Close]
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECOHS (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O9:H4 (strain HS) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312
[Close]
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECODH (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain K12 / DH10B) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312
[Close]
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECOBW (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain K12 / BW2952) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312
[Close]
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECO8A (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O8 (strain IAI1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312
[Close]
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECO81 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O81 (strain ED1a) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312
[Close]
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECO7I (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312
[Close]
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECO5E (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312
[Close]
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECO57 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O157:H7 GN=tkrA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
GHRB_ECOLI7.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOK17.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOHS7.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECODH7.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOBW7.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO8A7.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO817.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO7I7.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO5E7.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO577.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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