FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig318 contig Ccv1_Contig318:117..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECO55 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain 55989 / EAEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECO45 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECO27 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_ECO24 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP--VQNYIVK 456
            LY+ R +  P+ E+E  AEF+  L+ +L + D VV+  PLT++T  M  +  +  MK   ++VN ARG ++DT+A++ A   G IAG   DV+  +P   +  +  + N  + PH+   T  A+   A  V   L  +  GE  P  V   +VK
Sbjct:  177 LYYSRTRK-PEAEEELKAEFKP-LEELLKESDFVVLAVPLTKETYHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELFS-LKNVILAPHIGSATFGAREGMAELVARNLIAFKNGEVPPTLVNKEVVK 327          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SHIBS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 4 (strain Sb227) GN=ghrB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKPSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SALG2 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 45/142 (31.69%), Postives = 67/142 (47.18%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            LYH R +   + E    A +  DLDT+L + D V V  PLT +TR +F   + A+MK   + +N  RG + D  A++ A  +G I     DV+  +P   D P   M N    PH+   T + +    A   D L    +G+
Sbjct:  173 LYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVADENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 1
Query:   16 VKMDPQLEKETGAEFEEDL---DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            +  DP    +       DL   D  +   D V ++ PLT  T+ +F+ +  +KMKKGV ++N ARG ++D  A+V A  +G +A  + DV+  +P  KD       N  +TPH+  +T +AQ   A  + + +    KGE
Sbjct:  248 ISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLTPATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKDSRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALKGE 387          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SHIF8 (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri serotype 5b (strain 8401) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G  H+AG   DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHVAGL--DVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: GHRB_SHIDS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ghrB PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   67 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 426
            DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  193 DLDTLLQESDFVCLILPLTDETYHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
GHRB_ECO557.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO457.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO277.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO247.971e-1332.50Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GYAR_THEGJ1.041e-1233.12Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GHRB_SHIBS1.041e-1232.50Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_SALG21.041e-1231.69Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
SERA_ARATH1.360e-1231.43D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
GHRB_SHIF81.360e-1233.61Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_SHIDS1.360e-1232.50Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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