FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FRAP2 (S-adenosylmethionine synthetase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=metK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.011e-13
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 209
            P+S  V+++GTGKI D +I K+V+E+FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  309 PVSLMVNTFGTGKISDSKIEKLVSETFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_AZOSE (S-adenosylmethionine synthetase OS=Azoarcus sp. (strain EbN1) GN=metK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.011e-13
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  ++++GTG+I D++I+++V   FD RP  +   L+L R   G   KTAAYGHFGRD+P+FTWE
Sbjct:  311 PVSMMIETFGTGRITDEKIVELVQRHFDLRPKAIIQELNLLRPIYG---KTAAYGHFGRDEPEFTWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_NITEU (S-adenosylmethionine synthetase OS=Nitrosomonas europaea GN=metK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  V ++GTGKIPD ++ +++   FD RP  +   LDL R   G   KTAAYGHFGR++P FTWE
Sbjct:  310 PVSLMVQTFGTGKIPDGKLAELIARHFDLRPRAIIHELDLLRPIYG---KTAAYGHFGREEPSFTWE 373          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLOBL (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=metK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTGK+ D+EI+ IVN+ FD RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  316 PVSISVDTFGTGKMTDEEIVSIVNKVFDLRPGAIIRDLDLRR---PIYKQVAAYGHFGRTDIDVPWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLOBK (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Okra / Type B1) GN=metK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTGK+ D+EI+ IVN+ FD RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  316 PVSISVDTFGTGKMTDEEIVSIVNKVFDLRPGAIIRDLDLRR---PIYKQVAAYGHFGRTDIDVPWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLOBJ (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=metK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTGK+ D+EI+ IVN+ FD RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  316 PVSISVDTFGTGKMTDEEIVSIVNKVFDLRPGAIIRDLDLRR---PIYKQVAAYGHFGRTDIDVPWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLOBH (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTGK+ D+EI+ IVN+ FD RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  316 PVSISVDTFGTGKMTDEEIVSIVNKVFDLRPGAIIRDLDLRR---PIYKQVAAYGHFGRTDIDVPWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLOB1 (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTGK+ D+EI+ IVN+ FD RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  316 PVSISVDTFGTGKMTDEEIVSIVNKVFDLRPGAIIRDLDLRR---PIYKQVAAYGHFGRTDIDVPWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_GEOUR (S-adenosylmethionine synthetase OS=Geobacter uraniireducens (strain Rf4) GN=metK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD+ GTGKIP   I +IV E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  312 PVSVMVDTSGTGKIPSARIAQIVREVFDLRPRAIIEQLDLLR---PIYKKTAAYGHFGRELPEFTWE 375          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLOCE (S-adenosylmethionine synthetase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=metK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GT  IP+++I ++VN+ FD RP  +   L+L+R     + KTAAYGHFGRDD +F+WE
Sbjct:  319 PVSVLVDTFGTAVIPEEKISELVNKHFDLRPAAIINKLNLRR---PIYRKTAAYGHFGRDDAEFSWE 382          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK_FRAP28.011e-1350.72S-adenosylmethionine synthetase OS=Francisella phi... [more]
METK_AZOSE8.011e-1349.25S-adenosylmethionine synthetase OS=Azoarcus sp. (s... [more]
METK_NITEU1.046e-1250.75S-adenosylmethionine synthetase OS=Nitrosomonas eu... [more]
METK_CLOBL1.046e-1252.24S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBK1.046e-1252.24S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBJ1.046e-1252.24S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBH1.046e-1252.24S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOB11.046e-1252.24S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_GEOUR1.366e-1255.22S-adenosylmethionine synthetase OS=Geobacter urani... [more]
METK_CLOCE1.366e-1249.25S-adenosylmethionine synthetase OS=Clostridium cel... [more]

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Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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