FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_GEOSL (S-adenosylmethionine synthetase OS=Geobacter sulfurreducens GN=metK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD+ GTGKIP   I +I+ E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  312 PVSVMVDTAGTGKIPSARIAEIIREVFDLRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_AZOSB (S-adenosylmethionine synthetase OS=Azoarcus sp. (strain BH72) GN=metK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  V+++GTGKI D +I+ ++   FD RP  +   LDL R     + +TAAYGHFGRD+P+FTWE
Sbjct:  311 PVSLMVNTFGTGKIADDKIVDLIRAHFDLRPKAIIQTLDLLRP---IYSRTAAYGHFGRDEPEFTWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_POLSQ (S-adenosylmethionine synthetase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=metK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V ++GTGKI D++I ++V+E+FD RP  +   L+L R     + KTAAYGHFGR++P+FTWE
Sbjct:  311 PTSVMVSTFGTGKISDEKIAQLVSENFDLRPKGIVKMLNLLRP---IYRKTAAYGHFGREEPEFTWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_GEOMG (S-adenosylmethionine synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=metK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD+ GTGKI  K I +IV E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  312 PVSVMVDTAGTGKISSKRIAEIVREVFDLRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FRASN (S-adenosylmethionine synthetase OS=Frankia sp. (strain EAN1pec) GN=metK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+  FV+++GTGK+PD +I   V + FD RP  +  +LDL R     + +TAAYGHFGR + DFTWE
Sbjct:  321 PVGLFVETFGTGKVPDAQIQDAVTQVFDLRPAAIVRDLDLLR---PIYAQTAAYGHFGRPELDFTWE 384          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CHLSY (S-adenosylmethionine synthetase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=metK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            PLS  V+++GT  +PD+ ILK VNE FD RPG +  +LDL+R     + KTAA GHFGR D D  WE
Sbjct:  326 PLSLSVETFGTAAVPDEVILKAVNEVFDLRPGAIIRDLDLRR---PIYRKTAAGGHFGRTDIDLPWE 389          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CHLAA (S-adenosylmethionine synthetase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=metK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            PLS  V+++GT  +PD+ ILK VNE FD RPG +  +LDL+R     + KTAA GHFGR D D  WE
Sbjct:  326 PLSLSVETFGTAAVPDEVILKAVNEVFDLRPGAIIRDLDLRR---PIYRKTAAGGHFGRTDIDLPWE 389          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_ACACA (S-adenosylmethionine synthetase OS=Acanthamoeba castellanii GN=metK PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 3
Query:    3 PLSFFVDSYGT--GKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 224
            PLS FVDSYGT  G   D+++L I   +FD RPG +  +L L+R     + KTA +GHFGR+DPDF WE  K L +
Sbjct:  316 PLSVFVDSYGTAQGGRTDEDLLAISKSNFDLRPGKIINDLQLRRP---IYEKTAYHGHFGRNDPDFLWEAPKKLNF 388          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_TERTT (S-adenosylmethionine synthetase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 206
            P S  V+++GTGKI D +I+++V E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE+
Sbjct:  309 PTSISVNTFGTGKIDDGKIVELVKEHFDLRPRGLIEMLDLMR---PIYRKTAAYGHFGRELPEFTWEI 373          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_SYMTH (S-adenosylmethionine synthetase OS=Symbiobacterium thermophilum GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  V ++GTGK+PD+ + ++V E+FD RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  321 PVSILVTTFGTGKLPDERLAQLVRETFDLRPGAIIRDLDLRR---PIYRQVAAYGHFGRPDLDLPWE 384          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK_GEOSL1.785e-1253.73S-adenosylmethionine synthetase OS=Geobacter sulfu... [more]
METK_AZOSB1.785e-1249.25S-adenosylmethionine synthetase OS=Azoarcus sp. (s... [more]
METK_POLSQ2.331e-1250.75S-adenosylmethionine synthetase OS=Polynucleobacte... [more]
METK_GEOMG2.331e-1255.22S-adenosylmethionine synthetase OS=Geobacter metal... [more]
METK_FRASN2.331e-1249.25S-adenosylmethionine synthetase OS=Frankia sp. (st... [more]
METK_CHLSY2.331e-1253.73S-adenosylmethionine synthetase OS=Chloroflexus au... [more]
METK_CHLAA2.331e-1253.73S-adenosylmethionine synthetase OS=Chloroflexus au... [more]
METK_ACACA2.331e-1250.00S-adenosylmethionine synthetase OS=Acanthamoeba ca... [more]
METK_TERTT3.044e-1251.47S-adenosylmethionine synthetase OS=Teredinibacter ... [more]
METK_SYMTH3.044e-1247.76S-adenosylmethionine synthetase OS=Symbiobacterium... [more]

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Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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