FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FRATW (S-adenosylmethionine synthetase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 209
            P+S  V+++GTGKI D +I K+V E FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  309 PVSLMVNTFGTGKITDNQIEKLVAEVFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FRATT (S-adenosylmethionine synthetase OS=Francisella tularensis subsp. tularensis GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 209
            P+S  V+++GTGKI D +I K+V E FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  309 PVSLMVNTFGTGKITDNQIEKLVAEVFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FRATO (S-adenosylmethionine synthetase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 209
            P+S  V+++GTGKI D +I K+V E FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  309 PVSLMVNTFGTGKITDNQIEKLVAEVFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FRATN (S-adenosylmethionine synthetase OS=Francisella tularensis subsp. novicida (strain U112) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 209
            P+S  V+++GTGKI D +I K+V E FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  309 PVSLMVNTFGTGKITDNQIEKLVAEVFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FRATM (S-adenosylmethionine synthetase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 209
            P+S  V+++GTGKI D +I K+V E FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  309 PVSLMVNTFGTGKITDNQIEKLVAEVFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FRATH (S-adenosylmethionine synthetase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 209
            P+S  V+++GTGKI D +I K+V E FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  309 PVSLMVNTFGTGKITDNQIEKLVAEVFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FRATF (S-adenosylmethionine synthetase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 209
            P+S  V+++GTGKI D +I K+V E FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  309 PVSLMVNTFGTGKITDNQIEKLVAEVFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FRAT1 (S-adenosylmethionine synthetase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 209
            P+S  V+++GTGKI D +I K+V E FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  309 PVSLMVNTFGTGKITDNQIEKLVAEVFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLAM3 (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 209
            P+  +V+++GT  +P++ I++ + E+FD RP  +   LDL R     + +TAAYGHFGR+ PDFTWE +
Sbjct:  326 PVGLYVETFGTAHVPEERIVRAIRETFDLRPAAIVERLDLLR---PIYAQTAAYGHFGRELPDFTWEAL 391          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  VD++GT KIP+++I+++V + FD RP  +   LDL R   G   KTAAYGHFGR++P+F+WE
Sbjct:  312 PTSIAVDTFGTNKIPNEKIVELVKKHFDLRPKGIIQMLDLLRPIYG---KTAAYGHFGREEPEFSWE 375          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK_FRATW3.044e-1250.72S-adenosylmethionine synthetase OS=Francisella tul... [more]
METK_FRATT3.044e-1250.72S-adenosylmethionine synthetase OS=Francisella tul... [more]
METK_FRATO3.044e-1250.72S-adenosylmethionine synthetase OS=Francisella tul... [more]
METK_FRATN3.044e-1250.72S-adenosylmethionine synthetase OS=Francisella tul... [more]
METK_FRATM3.044e-1250.72S-adenosylmethionine synthetase OS=Francisella tul... [more]
METK_FRATH3.044e-1250.72S-adenosylmethionine synthetase OS=Francisella tul... [more]
METK_FRATF3.044e-1250.72S-adenosylmethionine synthetase OS=Francisella tul... [more]
METK_FRAT13.044e-1250.72S-adenosylmethionine synthetase OS=Francisella tul... [more]
METK_CLAM33.044e-1243.48S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_CHRVO3.044e-1250.75S-adenosylmethionine synthetase OS=Chromobacterium... [more]

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Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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