FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_ACIF5 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTG I D  I  +V E FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  311 PVSLMVDTFGTGVIDDDRIAALVQEHFDLRPKGIIQMLDLLRP---IYAKTAAYGHFGREEPEFTWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_ACIF2 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTG I D  I  +V E FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  311 PVSLMVDTFGTGVIDDDRIAALVQEHFDLRPKGIIQMLDLLRP---IYAKTAAYGHFGREEPEFTWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_HERAR (S-adenosylmethionine synthetase OS=Herminiimonas arsenicoxydans GN=metK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V ++GTGKI D++I ++V E FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  310 PTSVMVTTFGTGKISDEKIAQLVLEHFDLRPKGIVQMLDLLRP---IYQKTAAYGHFGREEPEFTWE 373          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CALS8 (S-adenosylmethionine synthetase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=metK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            PLS  VD++GTGKI D++I +IV   FD RP  +  +LDL+R     + K AAYGHFGR+D D  WE
Sbjct:  318 PLSIRVDTFGTGKIDDEKIAEIVKRVFDLRPAAIIRDLDLRR---PIYKKVAAYGHFGREDLDLPWE 381          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK2_PONAB (S-adenosylmethionine synthetase isoform type-2 OS=Pongo abelii GN=MAT2A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 224
            PLS  +  YGT +  ++E+L+IV ++FD RPG++  +LDLK+     + +TAAYGHFGRD   F WEV K LK+
Sbjct:  327 PLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIYQRTAAYGHFGRD--SFPWEVPKKLKY 395          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK2_MOUSE (S-adenosylmethionine synthetase isoform type-2 OS=Mus musculus GN=Mat2a PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 224
            PLS  +  YGT +  ++E+L+IV ++FD RPG++  +LDLK+     + +TAAYGHFGRD   F WEV K LK+
Sbjct:  327 PLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIYQRTAAYGHFGRD--SFPWEVPKKLKY 395          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK2_MACFA (S-adenosylmethionine synthetase isoform type-2 OS=Macaca fascicularis GN=MAT2A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 224
            PLS  +  YGT +  ++E+L+IV ++FD RPG++  +LDLK+     + +TAAYGHFGRD   F WEV K LK+
Sbjct:  327 PLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIYQRTAAYGHFGRD--SFPWEVPKKLKY 395          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK2_HUMAN (S-adenosylmethionine synthetase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 224
            PLS  +  YGT +  ++E+L+IV ++FD RPG++  +LDLK+     + +TAAYGHFGRD   F WEV K LK+
Sbjct:  327 PLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIYQRTAAYGHFGRD--SFPWEVPKKLKY 395          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_SACD2 (S-adenosylmethionine synthetase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=metK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTG I D EI K+V + FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  309 PTSISVNTFGTGSIADSEISKLVAQHFDLRPRGIIEMLDLLRP---IYRKTAAYGHFGREEPEFTWE 372          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_RALSO (S-adenosylmethionine synthetase OS=Ralstonia solanacearum GN=metK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P++  V + GTG IPD++I K+V E FD RP  +   LDL R   G   KTAAYGHFGR++P+F+WE
Sbjct:  310 PINITVYTEGTGVIPDEQIAKLVQEHFDLRPKGIVQMLDLLRPIYG---KTAAYGHFGREEPEFSWE 373          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK_ACIF53.044e-1252.24S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_ACIF23.044e-1252.24S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_HERAR3.976e-1252.24S-adenosylmethionine synthetase OS=Herminiimonas a... [more]
METK_CALS83.976e-1252.24S-adenosylmethionine synthetase OS=Caldicellulosir... [more]
METK2_PONAB3.976e-1248.65S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_MOUSE3.976e-1248.65S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_MACFA3.976e-1248.65S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_HUMAN3.976e-1248.65S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK_SACD25.192e-1252.24S-adenosylmethionine synthetase OS=Saccharophagus ... [more]
METK_RALSO5.192e-1252.24S-adenosylmethionine synthetase OS=Ralstonia solan... [more]

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Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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