FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BURP1 (S-adenosylmethionine synthetase OS=Burkholderia pseudomallei (strain 1710b) GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTG++ D+ I K+V E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  311 PTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BURP0 (S-adenosylmethionine synthetase OS=Burkholderia pseudomallei (strain 1106a) GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTG++ D+ I K+V E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  311 PTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BURMS (S-adenosylmethionine synthetase OS=Burkholderia mallei (strain SAVP1) GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTG++ D+ I K+V E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  311 PTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BURMA (S-adenosylmethionine synthetase OS=Burkholderia mallei GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTG++ D+ I K+V E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  311 PTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BURM9 (S-adenosylmethionine synthetase OS=Burkholderia mallei (strain NCTC 10229) GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTG++ D+ I K+V E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  311 PTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BURM7 (S-adenosylmethionine synthetase OS=Burkholderia mallei (strain NCTC 10247) GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTG++ D+ I K+V E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  311 PTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_ROSS1 (S-adenosylmethionine synthetase OS=Roseiflexus sp. (strain RS-1) GN=metK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            PLS  V+ +GT K+ ++ IL+++NE FD RPG +  +L L+R     +  TAAYGHFGRDD D  WE
Sbjct:  328 PLSISVECFGTNKVSEETILRLINEHFDLRPGAIIRDLRLRR---PIYRPTAAYGHFGRDDIDAPWE 391          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_ROSCS (S-adenosylmethionine synthetase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=metK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            PLS  V+ +GT K+P++ I+++++E FD RPG +  +L L+R     +  TAAYGHFGRDD D  WE
Sbjct:  328 PLSISVECFGTNKVPEETIVRLIDEHFDLRPGAIIRDLRLRR---PIYRPTAAYGHFGRDDIDAPWE 391          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_RALPJ (S-adenosylmethionine synthetase OS=Ralstonia pickettii (strain 12J) GN=metK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P++  V + GTG IPD++I K+V E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  310 PINITVYTEGTGVIPDEQIAKLVQEHFDLRPKGIVQMLDLLR---PVYEKTAAYGHFGREEPEFSWE 373          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_JANMA (S-adenosylmethionine synthetase OS=Janthinobacterium sp. (strain Marseille) GN=metK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V ++GTGKI D++I ++V E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  310 PTSVMVTTFGTGKISDEKIAQLVLEHFDLRPKGIVQMLDLLRP---IYQKTAAYGHFGREEPEFSWE 373          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK_BURP18.857e-1249.25S-adenosylmethionine synthetase OS=Burkholderia ps... [more]
METK_BURP08.857e-1249.25S-adenosylmethionine synthetase OS=Burkholderia ps... [more]
METK_BURMS8.857e-1249.25S-adenosylmethionine synthetase OS=Burkholderia ma... [more]
METK_BURMA8.857e-1249.25S-adenosylmethionine synthetase OS=Burkholderia ma... [more]
METK_BURM98.857e-1249.25S-adenosylmethionine synthetase OS=Burkholderia ma... [more]
METK_BURM78.857e-1249.25S-adenosylmethionine synthetase OS=Burkholderia ma... [more]
METK_ROSS11.157e-1149.25S-adenosylmethionine synthetase OS=Roseiflexus sp.... [more]
METK_ROSCS1.157e-1147.76S-adenosylmethionine synthetase OS=Roseiflexus cas... [more]
METK_RALPJ1.157e-1150.75S-adenosylmethionine synthetase OS=Ralstonia picke... [more]
METK_JANMA1.157e-1150.75S-adenosylmethionine synthetase OS=Janthinobacteri... [more]

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Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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