FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BORPE (S-adenosylmethionine synthetase OS=Bordetella pertussis GN=metK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P++  V + GTG IPD++I K+V E FD RP  +   LDL R     + KTAAYGHFGR +P+F+WE
Sbjct:  312 PINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLR---PIYTKTAAYGHFGRSEPEFSWE 375          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BORPA (S-adenosylmethionine synthetase OS=Bordetella parapertussis GN=metK PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P++  V + GTG IPD++I K+V E FD RP  +   LDL R     + KTAAYGHFGR +P+F+WE
Sbjct:  312 PINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLR---PIYTKTAAYGHFGRSEPEFSWE 375          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BORBR (S-adenosylmethionine synthetase OS=Bordetella bronchiseptica GN=metK PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P++  V + GTG IPD++I K+V E FD RP  +   LDL R     + KTAAYGHFGR +P+F+WE
Sbjct:  312 PINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLR---PIYTKTAAYGHFGRSEPEFSWE 375          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_THELT (S-adenosylmethionine synthetase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=metK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  +D++ T K+ ++++  ++ + FDFRP  +   L+L+R     + KTAAYGHFGR+DPDFTWE
Sbjct:  319 PVSLMIDTFSTSKVDEEKLKDVIIQLFDFRPLAIINKLNLQRP---IYKKTAAYGHFGRNDPDFTWE 382          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_RICAH (S-adenosylmethionine synthetase OS=Rickettsia akari (strain Hartford) GN=metK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 29/67 (43.28%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S + +++GT K+ +++I K++ + FD RPG +  +L L+      + KTA+YGHFGR+D DFTWE
Sbjct:  308 PVSVYTETFGTSKLSNEQITKLITQHFDMRPGKIIKHLALR---TPCYQKTASYGHFGREDADFTWE 371          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_RALEH (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P++  V + GTGKIPD +I ++V E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  310 PINVTVYTEGTGKIPDAKIAELVQEHFDLRPKGIVQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 373          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_POLNS (S-adenosylmethionine synthetase OS=Polynucleobacter necessarius (strain STIR1) GN=metK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V ++GTGKI D++I ++V+E FD RP  +   L+L R     + KTAAYGHFGR++P+F+WE
Sbjct:  311 PTSVMVSAFGTGKIVDEKIAQLVSEHFDLRPKGIVKMLNLLRP---IYKKTAAYGHFGREEPEFSWE 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_NITEC (S-adenosylmethionine synthetase OS=Nitrosomonas eutropha (strain C91) GN=metK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 29/67 (43.28%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  ++++GTGK+ D+++ +++  +FD RP  +   L+L R     + KTAAYGHFGR++P FTWE
Sbjct:  310 PVSLMLETFGTGKVSDEKLAELITRNFDLRPRAIIHELNLLRP---IYSKTAAYGHFGREEPSFTWE 373          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_LEPCP (S-adenosylmethionine synthetase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=metK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P++  V + GTG IPD EI K+V   FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  316 PMNITVYTEGTGVIPDAEIAKLVEAHFDLRPKGIIQMLDLLRP---IYQKTAAYGHFGREEPEFTWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_DIAST (S-adenosylmethionine synthetase OS=Diaphorobacter sp. (strain TPSY) GN=metK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P++  V + GTG IPD +I ++V E FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  316 PMNITVYTEGTGVIPDDQIAQLVQEHFDLRPKGIIQMLDLLRP---IYAKTAAYGHFGREEPEFTWE 379          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK_BORPE1.157e-1150.75S-adenosylmethionine synthetase OS=Bordetella pert... [more]
METK_BORPA1.157e-1150.75S-adenosylmethionine synthetase OS=Bordetella para... [more]
METK_BORBR1.157e-1150.75S-adenosylmethionine synthetase OS=Bordetella bron... [more]
METK_THELT1.511e-1144.78S-adenosylmethionine synthetase OS=Thermotoga lett... [more]
METK_RICAH1.511e-1143.28S-adenosylmethionine synthetase OS=Rickettsia akar... [more]
METK_RALEH1.511e-1150.75S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_POLNS1.511e-1149.25S-adenosylmethionine synthetase OS=Polynucleobacte... [more]
METK_NITEC1.511e-1143.28S-adenosylmethionine synthetase OS=Nitrosomonas eu... [more]
METK_LEPCP1.511e-1152.24S-adenosylmethionine synthetase OS=Leptothrix chol... [more]
METK_DIAST1.511e-1150.75S-adenosylmethionine synthetase OS=Diaphorobacter ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
back to top