FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_DELAS (S-adenosylmethionine synthetase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=metK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P++  V + GTG IPD EI K+V   FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  316 PMNITVYTEGTGVIPDAEIAKLVAAHFDLRPKGIIQMLDLLRP---IYSKTAAYGHFGREEPEFTWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_COXBU (S-adenosylmethionine synthetase OS=Coxiella burnetii GN=metK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTGKI +  I +++ E FD RPG +   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  309 PTSISVETFGTGKIDEVRIQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_COXBR (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=metK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTGKI +  I +++ E FD RPG +   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  309 PTSISVETFGTGKIDEVRIQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_COXB2 (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain CbuG_Q212) GN=metK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTGKI +  I +++ E FD RPG +   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  309 PTSISVETFGTGKIDEVRIQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_COXB1 (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain CbuK_Q154) GN=metK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTGKI +  I +++ E FD RPG +   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  309 PTSISVETFGTGKIDEVRIQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLONN (S-adenosylmethionine synthetase OS=Clostridium novyi (strain NT) GN=metK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  V+++GT KI D +I+ IVN+ FD RPG +  +L+LKR     + +TAAYGHFGR D +  WE
Sbjct:  316 PVSLLVNTFGTEKIEDSKIVDIVNKVFDLRPGAIIRDLELKR---PIYRQTAAYGHFGRTDVELPWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 218
            PLS  + +YGT +  ++E+L +VN++FD RPG++  +LDLK+     + KTA YGHFGR   +F WEV K L
Sbjct:  328 PLSISIFTYGTSQKTERELLDVVNKNFDLRPGVIVRDLDLKK---PIYQKTACYGHFGRS--EFPWEVPKKL 394          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_VARPS (S-adenosylmethionine synthetase OS=Variovorax paradoxus (strain S110) GN=metK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P++  V + GTG IPD +I ++V E FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  316 PMNITVYTEGTGVIPDAKIAELVREFFDLRPKGIIQMLDLLRP---IYQKTAAYGHFGREEPEFTWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_NITSB (S-adenosylmethionine synthetase OS=Nitratiruptor sp. (strain SB155-2) GN=metK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VDS+GT K+PD+++   V + FD  P  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  308 PVSIMVDSHGTAKVPDEKLEACVRDLFDLTPRGIIKTLDLLRP---IYRKTAAYGHFGRELPEFTWE 371          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BURPP (S-adenosylmethionine synthetase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  V+++GTG++ D  I ++V E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  311 PTSVMVNTFGTGRVSDATITRLVQEHFDLRPKGIIQMLDLLRP---IYEKSAAYGHFGREEPEFTWE 374          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK_DELAS2.577e-1152.24S-adenosylmethionine synthetase OS=Delftia acidovo... [more]
METK_COXBU2.577e-1146.27S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXBR2.577e-1146.27S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXB22.577e-1146.27S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXB12.577e-1146.27S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_CLONN2.577e-1149.25S-adenosylmethionine synthetase OS=Clostridium nov... [more]
METK1_BOVIN2.577e-1147.22S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_VARPS3.366e-1150.75S-adenosylmethionine synthetase OS=Variovorax para... [more]
METK_NITSB3.366e-1149.25S-adenosylmethionine synthetase OS=Nitratiruptor s... [more]
METK_BURPP3.366e-1147.76S-adenosylmethionine synthetase OS=Burkholderia ph... [more]

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Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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