FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.404e-33
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVD+YGTGKIPDKEILKIV E+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  319 PLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.404e-33
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVD+YGTGKIPDKEILKIV E+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  319 PLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.395e-33
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKP 215
            PLS +VD+YGTGKIPDKEILKIV E+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKP
Sbjct:  315 PLSVYVDTYGTGKIPDKEILKIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKP 385          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.128e-33
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 230
            PLS FVDSYGTGKIPDKEIL IV E+FDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLK  K
Sbjct:  317 PLSVFVDSYGTGKIPDKEILNIVKETFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGK 392          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK3_PICSI (S-adenosylmethionine synthetase 3 OS=Picea sitchensis GN=METK3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.086e-33
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 230
            PLS FVDSYGTG IPDK IL+++ ++FDFRPGM+TINLDLKRGGNGRF KTAAYGHFGRDDPDFTWE+VKPLK EK
Sbjct:  315 PLSVFVDSYGTGTIPDKVILELIKKNFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEIVKPLKQEK 390          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.969e-33
Identity = 65/79 (82.28%), Postives = 73/79 (92.41%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVDSYGTGKIPD+EILK+V E+FDFRPGM+TINLDLK+GGN RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  317 PLSVFVDSYGTGKIPDREILKLVKENFDFRPGMITINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.553e-32
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVD+YGTGKIPDKEILKIV E+FDFRPG++TINL LKRGG  R+LKTAAYGHFGRDDPDFTWEVVKPL+ EKP A
Sbjct:  316 PLSVFVDTYGTGKIPDKEILKIVKENFDFRPGLITINLGLKRGGY-RYLKTAAYGHFGRDDPDFTWEVVKPLELEKPAA 393          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK1_TRIMO (S-adenosylmethionine synthetase 1 OS=Triticum monococcum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.553e-32
Identity = 65/79 (82.28%), Postives = 73/79 (92.41%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVDSYGTGKIPDKEILKIV E+FDFRPGM++INLDLK+GGN RF+KTAAYGHFGR+D DFTWEVVKPLK++K  A
Sbjct:  317 PLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKKGGN-RFIKTAAYGHFGREDADFTWEVVKPLKFDKASA 394          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.028e-32
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 236
            PLS FVD+YGTGKI DK+ILKIV E+FDFRPGM+  NLDL RGGN R+LKTAAYGHFGRDD DFTWEVVKPLKWEKPQ
Sbjct:  315 PLSVFVDTYGTGKISDKDILKIVKETFDFRPGMIANNLDLLRGGN-RYLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 391          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.028e-32
Identity = 64/79 (81.01%), Postives = 73/79 (92.41%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVDSYGTGKIPD+EILK+V E+FDFRPGM++INLDLK+GGN RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  317 PLSVFVDSYGTGKIPDREILKLVKENFDFRPGMISINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK2_ATRNU1.404e-3383.54S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK1_ATRNU1.404e-3383.54S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK_CARPA2.395e-3390.14S-adenosylmethionine synthetase OS=Carica papaya G... [more]
METK_MEDFA3.128e-3386.84S-adenosylmethionine synthetase OS=Medicago falcat... [more]
METK3_PICSI4.086e-3382.89S-adenosylmethionine synthetase 3 OS=Picea sitchen... [more]
METK1_HORVU6.969e-3382.28S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]
METK_MUSAC1.553e-3283.54S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK1_TRIMO1.553e-3282.28S-adenosylmethionine synthetase 1 OS=Triticum mono... [more]
METK_MESCR2.028e-3283.33S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]
METK3_HORVU2.028e-3281.01S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]

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Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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