FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9909 contig Ccv1_Contig9909:1043..1456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.006e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVDSYGTGKIPD+EILK+V E+FDFRPGM++INLDLK+GG  RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  317 PLSVFVDSYGTGKIPDREILKLVKENFDFRPGMISINLDLKKGGK-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.006e-31
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVD+YGTGKI D+EILKIV E+FDFRPGM+ I LDLK+GGN R+LKTAAYGHFGR+DPDFTWE  K LKWEKPQA
Sbjct:  319 PLSVFVDTYGTGKIHDREILKIVKENFDFRPGMIAIALDLKKGGN-RYLKTAAYGHFGREDPDFTWEAAKTLKWEKPQA 396          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CAMSI (S-adenosylmethionine synthetase OS=Camellia sinensis GN=SAM PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.824e-31
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            PLS FVD+YGTGKIPDKEILKIV ESFDFRPGM+ INLDLKRGGN RFLKTAAYGHFGRDDPDFTWE
Sbjct:  315 PLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWE 381          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.898e-30
Identity = 60/73 (82.19%), Postives = 65/73 (89.04%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 221
            PLS FVD+Y TG IPDK+IL ++ E+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEVVKPLK
Sbjct:  315 PLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVVKPLK 387          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 221
            PLS FVD+Y TG IPDK+IL ++ E+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEV+KPLK
Sbjct:  315 PLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVIKPLK 387          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.237e-30
Identity = 61/78 (78.21%), Postives = 68/78 (87.18%), Query Frame = 3
Query:    3 PLSFFVDSYGTG--KIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 230
            PLS FVD+YGTG  KI D EILK++ E+FDFRPGM++INLDLKRGGN RF KTAAYGHFGR+DPDFTWE VK LKWEK
Sbjct:  315 PLSVFVDTYGTGTGKIQDAEILKLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.741e-29
Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 230
            PLS FVD+Y TGKIPDK+IL ++ ++FDFRPGM++INLDLKRGGN RF KTAAYGHFGRDDPDF+WE VK LK EK
Sbjct:  315 PLSVFVDTYKTGKIPDKDILALIKKNFDFRPGMISINLDLKRGGNFRFQKTAAYGHFGRDDPDFSWETVKQLKPEK 390          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.579e-29
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 221
            PLS FVD+Y TGKIPDK+IL ++ E+FDFRPGM+ INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  315 PLSVFVDTYKTGKIPDKDILDLIKENFDFRPGMIAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.320e-28
Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 221
            PLS FVD+Y TGKIPD++IL+++ E+FDFRPGM+ INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  315 PLSVFVDTYKTGKIPDRDILELIKENFDFRPGMIAINLDLMRGGNSRYQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.750e-28
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 221
            PLS FVD+Y TG IPDK+IL ++ E+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  315 PLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNYRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK2_HORVU1.006e-3179.75S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK2_DIACA1.006e-3179.75S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]
METK_CAMSI3.824e-3191.04S-adenosylmethionine synthetase OS=Camellia sinens... [more]
METK3_ARATH1.898e-3082.19S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK4_BRAJU2.479e-3080.82S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK1_PICSI3.237e-3078.21S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK1_VITVI2.741e-2976.32S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK3_VITVI3.579e-2979.45S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK4_POPTR2.320e-2875.34S-adenosylmethionine synthetase 4 OS=Populus trich... [more]
METK3_SOLLC6.750e-2876.71S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
back to top