FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.685e-21
Identity = 51/74 (68.92%), Postives = 55/74 (74.32%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDD--PDFTWEVVKPL 218
            PLS  VD+YGTGKIPD EIL  V  +FDFRPGMM   LDLKRGGN R+  TAAYGHFGRD+    FTWE V PL
Sbjct:  314 PLSVHVDTYGTGKIPDSEILAKVKAAFDFRPGMMGKALDLKRGGNKRYQTTAAYGHFGRDEDLDIFTWEKVVPL 387          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK2_PEA (S-adenosylmethionine synthetase 2 OS=Pisum sativum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.992e-17
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 173
            PLS FVDSYGTGKIPD+EIL IV E+FDFRPGM++I+LDL RGGNGRF + +    F
Sbjct:  317 PLSVFVDSYGTGKIPDREILNIVKEAFDFRPGMISISLDLLRGGNGRFFEDSCIWTF 373          

HSP 2 Score: 23.0978 bits (48), Expect = 1.992e-17
Identity = 6/9 (66.67%), Postives = 7/9 (77.78%), Query Frame = 2
Query:  149 EDCCLWTLW 175
            ED C+WT W
Sbjct:  366 EDSCIWTFW 374          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_DICDI (S-adenosylmethionine synthetase OS=Dictyostelium discoideum GN=metK PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.143e-17
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 221
            PLS FVD+YGTGK  D EIL I++ +FD RPG +  +L L R     F KTA+ GHFGR+DPDFTWE VK LK
Sbjct:  314 PLSVFVDTYGTGKKTDAEILAIIDNNFDLRPGCLMRDLQLTR---PIFQKTASGGHFGRNDPDFTWETVKELK 383          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_FERNB (S-adenosylmethionine synthetase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=metK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.118e-14
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE---VVKPLK 221
            P+S  ++++GT K+ ++++ K+V E FDFRPG +   LDL R     + KTAAYGHFGR+DPDFTWE   +V+ LK
Sbjct:  319 PVSIMINTFGTAKVDEEKLRKVVEEIFDFRPGAIIKKLDLLR---PIYRKTAAYGHFGRNDPDFTWERTDMVRELK 391          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_NITMU (S-adenosylmethionine synthetase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=metK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTGKIPD +I+K++   FD RP  +   LDL R     + KTAAYGHFGRD+P+F+WE
Sbjct:  310 PVSLMVDTFGTGKIPDDKIVKLIERHFDLRPRGIIHGLDLLR---PIYEKTAAYGHFGRDEPEFSWE 373          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTGKI D+EI+ I+N+ FD RPG +  +LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  316 PVSIIVDTFGTGKISDEEIVNIINKVFDLRPGAIIRDLDLRR---PIYRQTAAYGHFGRTDLDLPWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTGKI D+EI+ I+N+ FD RPG +  +LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  316 PVSIIVDTFGTGKISDEEIVNIINKVFDLRPGAIIRDLDLRR---PIYRQTAAYGHFGRTDLDLPWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_SYNFM (S-adenosylmethionine synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=metK PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE---VVKPLK 221
            P+S  +D++GTGKIP   I +IV + F F+P  M   L L R     F KTA YGHFGR+DPDFTWE   +V+P++
Sbjct:  312 PVSLMIDTFGTGKIPSDRIAEIVRKLFSFKPANMIKQLRLLRP---IFKKTACYGHFGRNDPDFTWEKTDMVEPIR 384          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CELJU (S-adenosylmethionine synthetase OS=Cellvibrio japonicus (strain Ueda107) GN=metK PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P S  ++++GTGK+PD EI+K+V E FD RP  +   L+LKR     + +TAAYGHFGR+ PDFTWE
Sbjct:  309 PTSISINTFGTGKLPDAEIIKLVREHFDLRPRGLIEMLNLKR---PIYRQTAAYGHFGRELPDFTWE 372          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_THESQ (S-adenosylmethionine synthetase OS=Thermotoga sp. (strain RQ2) GN=metK PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  +D+YGT K+ + ++LK++ E FDFRPG +   L+L R     + KTAAYGHFGR++ +FTWE
Sbjct:  318 PVSIMIDTYGTAKVDEDKLLKVITELFDFRPGAIIKKLNLLR---PIYRKTAAYGHFGRNEEEFTWE 381          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK_OSTLU4.685e-2168.92S-adenosylmethionine synthetase OS=Ostreococcus lu... [more]
METK2_PEA1.992e-1770.18S-adenosylmethionine synthetase 2 OS=Pisum sativum... [more]
METK_DICDI3.143e-1760.27S-adenosylmethionine synthetase OS=Dictyostelium d... [more]
METK_FERNB1.118e-1450.00S-adenosylmethionine synthetase OS=Fervidobacteriu... [more]
METK_NITMU2.490e-1453.73S-adenosylmethionine synthetase OS=Nitrosospira mu... [more]
METK_CLOPS7.245e-1453.73S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP17.245e-1453.73S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_SYNFM9.463e-1450.00S-adenosylmethionine synthetase OS=Syntrophobacter... [more]
METK_CELJU9.463e-1453.73S-adenosylmethionine synthetase OS=Cellvibrio japo... [more]
METK_THESQ1.614e-1349.25S-adenosylmethionine synthetase OS=Thermotoga sp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
back to top