FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9909 contig Ccv1_Contig9909:1043..1456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_THEP1 (S-adenosylmethionine synthetase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=metK PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  +D+YGT K+ + ++LK++ E FDFRPG +   L+L R     + KTAAYGHFGR++ +FTWE
Sbjct:  318 PVSIMIDTYGTAKVDEDKLLKVITELFDFRPGAIIKKLNLLR---PIYRKTAAYGHFGRNEEEFTWE 381          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_THEMA (S-adenosylmethionine synthetase OS=Thermotoga maritima GN=metK PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  +D+YGT K+ + ++LK++ E FDFRPG +   L+L R     + KTAAYGHFGR++ +FTWE
Sbjct:  318 PVSIMIDTYGTAKVDEDKLLKVITELFDFRPGAIIKKLNLLR---PIYRKTAAYGHFGRNEEEFTWE 381          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_SYNWW (S-adenosylmethionine synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=metK PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            PLS  V+++GTGKI D +I++++ ++FD RP  +  +LDL+R     + KTAAYGHFGR+D +FTWE
Sbjct:  319 PLSINVNTFGTGKISDDKIIELIKKNFDLRPAAIIRDLDLRR---PIYRKTAAYGHFGREDAEFTWE 382          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_THIDA (S-adenosylmethionine synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.108e-13
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 206
            P S  VD++GTGKIP+ +I++++   FD RP  +   LDL R     + +TA+YGHFGRD+P+FTWEV
Sbjct:  311 PTSLMVDTFGTGKIPEAKIVELIQAHFDLRPKGIVNMLDLLR---PIYTRTASYGHFGRDEPEFTWEV 375          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_THENN (S-adenosylmethionine synthetase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=metK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.753e-13
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  +D++GT K+ ++++LK++ E FDFRPG +   L+L R     + KTAAYGHFGR++ +FTWE
Sbjct:  318 PVSILIDTFGTAKVDEEKLLKVITEIFDFRPGAIIKKLNLLR---PIYRKTAAYGHFGRNEEEFTWE 381          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLOD6 (S-adenosylmethionine synthetase OS=Clostridium difficile (strain 630) GN=metK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.753e-13
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            PLS F+D++GTGK+ +++++++VN+ FD RPG +  +LDL++     + K AAYGHFGR D D  WE
Sbjct:  319 PLSIFIDTFGTGKVSEEKLVELVNKHFDLRPGAIIRDLDLRK---PLYKKVAAYGHFGRTDIDLPWE 382          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_AMOPR (S-adenosylmethionine synthetase OS=Amoeba proteus GN=metK PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.596e-13
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 218
            PL+ +V++YGTG   D E+L+I+N++FDFRPG +   LDL      ++++TA +GHFGR  P+F WE  K L
Sbjct:  355 PLNIYVNTYGTGTHSDSELLEIINKNFDFRPGFIIEELDLLNPDRIKYVETAYHGHFGR--PEFPWEQEKTL 424          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_CLOBM (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=metK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.696e-13
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD++GTGKI D+EI+ IVN+ FD RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  316 PVSISVDTFGTGKITDEEIVSIVNKVFDLRPGAIIRDLDLRR---PIYKQVAAYGHFGRTDIDVPWE 379          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_PELCD (S-adenosylmethionine synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  V+++GTG +P  EI +IV E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  312 PVSIMVNTFGTGVLPSNEIARIVREEFDMRPAAIIETLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_GEOSM (S-adenosylmethionine synthetase OS=Geobacter sp. (strain M21) GN=metK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 203
            P+S  VD  GTGKIP K I +IV E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  312 PVSVMVDCNGTGKIPSKRISEIVREVFDMRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK_THEP11.614e-1349.25S-adenosylmethionine synthetase OS=Thermotoga petr... [more]
METK_THEMA1.614e-1349.25S-adenosylmethionine synthetase OS=Thermotoga mari... [more]
METK_SYNWW1.614e-1350.75S-adenosylmethionine synthetase OS=Syntrophomonas ... [more]
METK_THIDA2.108e-1350.00S-adenosylmethionine synthetase OS=Thiobacillus de... [more]
METK_THENN2.753e-1347.76S-adenosylmethionine synthetase OS=Thermotoga neap... [more]
METK_CLOD62.753e-1347.76S-adenosylmethionine synthetase OS=Clostridium dif... [more]
METK_AMOPR3.596e-1347.22S-adenosylmethionine synthetase OS=Amoeba proteus ... [more]
METK_CLOBM4.696e-1353.73S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_PELCD6.134e-1352.24S-adenosylmethionine synthetase OS=Pelobacter carb... [more]
METK_GEOSM6.134e-1356.72S-adenosylmethionine synthetase OS=Geobacter sp. (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
back to top