FC872154

Overview
NameFC872154
Unique NameFC872154
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMED9_HUMAN (Transmembrane emp24 domain-containing protein 9 OS=Homo sapiens GN=TMED9 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14
Identity = 42/134 (31.34%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   88 GQFAFTAAEAGDYMACFWAVDHSPQTTVT--------IDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G+F FT+   G++  C     HS  T  +        +  D + G  A D++ +A K  +  ++L +++L + V  I +E  Y R REE  ++ +  TN R+ W+S     I +A+   Q+ HLK+FFE KKL+
Sbjct:  106 GRFTFTSHTPGEHQICL----HSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMED9_BOVIN (Transmembrane emp24 domain-containing protein 9 OS=Bos taurus GN=TMED9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14
Identity = 42/134 (31.34%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   88 GQFAFTAAEAGDYMACFWAVDHSPQTTVT--------IDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G+F FT+   G++  C     HS  T  +        +  D + G  A D++ +A K  +  ++L +++L + V  I +E  Y R REE  ++ +  TN R+ W+S     I +A+   Q+ HLK+FFE KKL+
Sbjct:  106 GRFTFTSHTPGEHQICL----HSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: ERV25_CANAL (Endoplasmic reticulum vesicle protein 25 OS=Candida albicans GN=ERV25 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 45/156 (28.85%), Postives = 78/156 (50.00%), Query Frame = 1
Query:   22 KLTVRVTSAYGNSY-HYADRVDSGQFAFTAAEAGDYMACF-------WAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            +L ++VT + GN Y +  D V     AFT+        C        W+     QT  +++ D  +G  A+DW+ +     +  +E+ELK++      I +E+ YL+ REE M++ N  TNSR+ WFS   +   +     Q+ +L+ +F+ K +I
Sbjct:   62 RLDLKVTDSLGNEYRNKKDVVGHANVAFTSQHNAAIDICLTNYLDNKWSKHQ--QTVRSVELDIESGAAARDWNALQASEKLKPVEVELKRIESITEEIVEELRYLKAREERMRDTNESTNSRVKWFSIVVIASLVGFGVWQIQYLRHYFKVKHII 215          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: ERV25_GIBZE (Endoplasmic reticulum vesicle protein 25 OS=Gibberella zeae GN=ERV25 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.779e-13
Identity = 44/148 (29.73%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   37 VTSAYGNSY-HYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQT----TVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            +  A GN Y    D V   +  FT+     +  CF  V    Q     T  I+ D   G  AKDWS +     +  +E EL+++ +  S +  EM YLR RE+++++ N  TN+R+ WF   + ++ + +   Q+ +L+ +F  K LI
Sbjct:   67 IRDAVGNEYGRPRDVVGESRTVFTSHADAAFDVCFENVPSGSQRLNSPTRHIELDIDIGADAKDWSAIQATEKLKPVEAELRRVEEITSELVTEMEYLRAREQKLRDTNESTNNRVKWFGIATTWLLVGLWAWQIMYLRAYFRSKHLI 214          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: ERV25_DEBHA (Endoplasmic reticulum vesicle protein 25 OS=Debaryomyces hansenii GN=ERV25 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 43/156 (27.56%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   22 KLTVRVTSAYGNSYHYA-DRVDSGQFAFTAAEAGDYMACF-------WAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            +L +R+  + GN Y    D   S +  FT+  +  +  CF       W+   +      I+ D  +G  A+DW+ V     +  +E++L+++ +T   I  E+ YL+ REE M++ N  TNSR+ WFS   +   + +   Q+ +L+ +F+ K +I
Sbjct:   61 RLDLRIVDSLGNEYRRKNDIAGSVKIGFTSHNSAAFDICFTNQLERKWS--KNTNFVREIELDVESGAAARDWNAVQAAEKLKPVEVDLRRIEETTYEISGELQYLKAREERMRDTNESTNSRVKWFSILVITSLVGLGAWQVQYLRHYFKVKHII 214          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: ERV25_CRYNE (Endoplasmic reticulum vesicle protein 25 OS=Cryptococcus neoformans GN=ERV25 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 44/160 (27.50%), Postives = 79/160 (49.38%), Query Frame = 1
Query:    4 PGARIHKLTVRVTSAYGNSYHYADRVD---SGQFAFTAAEAGDYMACF---WAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            PG    ++ +++         Y  + D     + A T  E+ D   C    +    +P+   +++ D   G  A D++ +A + S+ ++E+E++KL      I +EM YL+ RE  M++ N  TN R+  FS   +   I +   QL HL++FF++K LI
Sbjct:   53 PGEPDQQVDIQILDGSERGNVYLSKKDVRGEARLAVTTHESADVGVCLTNRYTGSGNPRVVRSVELDVDIGADAIDYNAIANQESLSILEVEMRKLEAVTKEIVEEMGYLQRREMRMRDTNESTNQRVKVFSVLIICCTIGLGVWQLLHLRSFFKRKYLI 212          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMED4_MOUSE (Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   88 GQFAFTAAEAGDYMACFWAVDHSPQTTVT--------IDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G+F FT+   GD+  C     HS  T +         +  D + G  A ++  +A K  +  ++L  ++L D V  I +E  Y R REE  +  +  TN R+ W+S     I I     Q+ HLK+FFE KKL+
Sbjct:   98 GRFTFTSHTPGDHQICL----HSNSTRMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMED4_HUMAN (Transmembrane emp24 domain-containing protein 4 OS=Homo sapiens GN=TMED4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   88 GQFAFTAAEAGDYMACFWAVDHSPQTTVT--------IDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G+F FT+   GD+  C     HS  T +         +  D + G  A ++  +A K  +  ++L  ++L D V  I +E  Y R REE  +  +  TN R+ W+S     I I     Q+ HLK+FFE KKL+
Sbjct:   98 GRFTFTSHTPGDHQICL----HSNSTRMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: ERV25_EMENI (Endoplasmic reticulum vesicle protein 25 OS=Emericella nidulans GN=erv25 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.801e-12
Identity = 41/154 (26.62%), Postives = 81/154 (52.60%), Query Frame = 1
Query:   25 LTVRVTSAYGNSY-HYADRVDSGQFAFTAAEAGDYMACFWAVDHS------PQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            + + +  + GN +    D +   + AFT+A    +  CF     S      P  ++ +D D   G  A+DWSN+  +  +  +E +L+++ + V+ +  EM YLR RE+++++ N  TN R+ WF+  ++ + + +   Q+ +L+ +F  K LI
Sbjct:   65 VNMHIKDSMGNDHGRPKDVIGETRQAFTSAGDTTFDVCFENTLVSRRGISNPHRSIELDVD--IGADARDWSNIQAQEKLKPIETDLRRIEEIVAEVVSEMEYLRAREQKLRDTNESTNERVKWFAFGTMGMLVGLGVWQVIYLRAYFRSKHLI 216          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: ERV25_YEAST (Endoplasmic reticulum vesicle protein 25 OS=Saccharomyces cerevisiae GN=ERV25 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.353e-12
Identity = 43/154 (27.92%), Postives = 79/154 (51.30%), Query Frame = 1
Query:   22 KLTVRVTSAYGNSYHYA-DRVDSGQFAFTAAEAGDYMACF--WAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLW---HLKTFFEKKKLI 465
            KL + V  + GN Y    D     + AFTA  +  +  CF   A       +  I+ D  +G +A+DW+ ++    +  +E+EL+++ +    I  E+ YL+ REE +++ N  TN R+     FS+ + I ++ + +W   +LK +F+ K +I
Sbjct:   61 KLNLFVRDSVGNEYRRKRDFAGDVRVAFTAPSSTAFDVCFENQAQYRGRSLSRAIELDIESGAEARDWNKISANEKLKPIEVELRRVEEITDEIVDELTYLKNREERLRDTNESTNRRV---RNFSILVIIVLSSLGVWQVNYLKNYFKTKHII 211          
The following BLAST results are available for this feature:
BLAST of FC872154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
TMED9_HUMAN1.925e-1431.34Transmembrane emp24 domain-containing protein 9 OS... [more]
TMED9_BOVIN1.925e-1431.34Transmembrane emp24 domain-containing protein 9 OS... [more]
ERV25_CANAL2.128e-1328.85Endoplasmic reticulum vesicle protein 25 OS=Candid... [more]
ERV25_GIBZE2.779e-1329.73Endoplasmic reticulum vesicle protein 25 OS=Gibber... [more]
ERV25_DEBHA3.630e-1327.56Endoplasmic reticulum vesicle protein 25 OS=Debary... [more]
ERV25_CRYNE8.086e-1327.50Endoplasmic reticulum vesicle protein 25 OS=Crypto... [more]
TMED4_MOUSE1.379e-1232.09Transmembrane emp24 domain-containing protein 4 OS... [more]
TMED4_HUMAN1.379e-1232.09Transmembrane emp24 domain-containing protein 4 OS... [more]
ERV25_EMENI1.801e-1226.62Endoplasmic reticulum vesicle protein 25 OS=Emeric... [more]
ERV25_YEAST2.353e-1227.92Endoplasmic reticulum vesicle protein 25 OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionC05701C05SK AbsCOv1 Citrus clementina cDNA clone C05701C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872154 ID=FC872154; Name=FC872154; organism=Citrus clementina; type=EST; length=515bp
CGGCCGGGTGCCCGAATCCATAAACTCACCGTCAGGGTGACGTCGGCTTA
CGGTAATAGTTATCATTACGCGGACCGAGTTGACTCGGGCCAGTTTGCGT
TTACGGCTGCCGAGGCTGGCGATTACATGGCTTGTTTTTGGGCCGTTGAT
CATAGCCCGCAAACAACGGTGACGATTGATTTTGATTGGAGGACTGGTGT
GCAAGCTAAGGACTGGTCTAACGTTGCAAAGAAAGGTTCTGTTGACGTCA
TGGAATTAGAGCTGAAGAAGTTGTATGATACTGTTAGTTCTATTCACCAG
GAGATGTTTTATCTCCGTGAAAGAGAAGAAGAAATGCAGGAGCTGAACCG
TGTTACTAACTCCAGAATGGCCTGGTTTAGTGGGTTTTCGCTGTTTATAT
GCATTGCTGTTGCTGGCATGCAACTATGGCACTTGAAAACATTCTTTGAG
AAAAAGAAGCTTATATAAGAGAAGCGTCAATTAAATTAAGCAATTTTCTA
TTTGGTGCTCTTGTA
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