FC872155

Overview
NameFC872155
Unique NameFC872155
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_CANGA (60S ribosomal protein L24 OS=Candida glabrata GN=RPL24 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.689e-25
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT +YR+ HKK I  E  KK+ R T K   R+IVGA+LE+I++RR+ KPEVR A R+   +  KE+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKRDDKAKADKEK 115          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24A_YEAST (60S ribosomal protein L24-A OS=Saccharomyces cerevisiae GN=RPL24A PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.124e-25
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEK 115          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24B_YEAST (60S ribosomal protein L24-B OS=Saccharomyces cerevisiae GN=RPL24B PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.998e-25
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+
Sbjct:    1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEK 115          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis GN=RPL24 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.045e-24
Identity = 54/116 (46.55%), Postives = 78/116 (67.24%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            +K E+  FSGAKIYPG+G  F+R DS++F F +SK    FH R  P ++ WT +YR+ HKK I  E  +K+ R + K   R++VGA+LE+I++RR+ KPEVR A R+   +  KE+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQRDEKKKADKEK 115          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_NEUCR (60S ribosomal protein L24 OS=Neurospora crassa GN=rpl-24 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.782e-24
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 1
Query:   58 FSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            FSG +IYPGKG  ++R DS++F F N K +  F  R  P ++ WT +YR+QHKK I+ E  KK+ R T K   R+IVGA+LEVI++RR+ +PE R AAR AA++E K +
Sbjct:    8 FSGQRIYPGKGKLYVRGDSKIFRFQNGKSESLFLQRKNPRRIAWTVLYRRQHKKGISEEVAKKRSRRTVKA-QRAIVGASLEVIKERRSMRPEARSAARLAAIKESKAK 115          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 381
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 381
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 381
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_HUMAN (60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 381
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_FELCA (60S ribosomal protein L24 OS=Felis catus GN=RPL24 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 381
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
The following BLAST results are available for this feature:
BLAST of FC872155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL24_CANGA4.689e-2549.1460S ribosomal protein L24 OS=Candida glabrata GN=R... [more]
RL24A_YEAST6.124e-2549.1460S ribosomal protein L24-A OS=Saccharomyces cerev... [more]
RL24B_YEAST7.998e-2549.1460S ribosomal protein L24-B OS=Saccharomyces cerev... [more]
RL24_KLULA1.045e-2446.5560S ribosomal protein L24 OS=Kluyveromyces lactis ... [more]
RL24_NEUCR1.782e-2450.4660S ribosomal protein L24 OS=Neurospora crassa GN=... [more]
RL24_RAT2.327e-2447.8360S ribosomal protein L24 OS=Rattus norvegicus GN=... [more]
RL24_MOUSE2.327e-2447.8360S ribosomal protein L24 OS=Mus musculus GN=Rpl24... [more]
RL24_MACFA2.327e-2447.8360S ribosomal protein L24 OS=Macaca fascicularis G... [more]
RL24_HUMAN2.327e-2447.8360S ribosomal protein L24 OS=Homo sapiens GN=RPL24... [more]
RL24_FELCA2.327e-2447.8360S ribosomal protein L24 OS=Felis catus GN=RPL24 ... [more]

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Properties
Property NameValue
Genbank descriptionC05701C06SK AbsCOv1 Citrus clementina cDNA clone C05701C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872155 ID=FC872155; Name=FC872155; organism=Citrus clementina; type=EST; length=616bp
GGGGGTGCCGCGCAATCGACATCAGAAGCCATGGTTCTCAAGACTGAACT
GTGCCGCTTTAGTGGTGCCAAGATTTATCCTGGCAAGGGTATCAGATTCA
TTCGCTCTGATTCCCAGGTTTTCCTCTTTGCCAATTCAAAATGCAAGAGG
TACTTCCACAACCGCTTGAAGCCATCAAAGCTTACATGGACTTCCATGTA
CAGGAAACAACACAAGAAGGATATTGCTGCTGAGGCTGTAAAGAAGAAGC
GCCGCTCCACAAAGAAGCCATATTCAAGGTCTATTGTCGGTGCAACCTTG
GAAGTCATACAGAAGAGGAGGACTGAAAAGCCTGAAGTTCGAGATGCTGC
TCGTGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAGAAGACCAAAG
ATGAAAAGAGGGCCAAGAAAGCTGAGGTGACATCCAAGTCAAAGACTCAA
AGCAAGGGTAGCATGCCCAAGGGTGCCGCTCCGAAGGGCCCCAAGCTTGG
TGGTGGTGGTGGAAAACGGTGAAGTGCTTCATCTCTTCATTTCTTCCTGA
CTACTATCTTAAACAATTAATATATTTATTCCATATTTTGTGAATGGATT
GGTCAATACTTGAGGG
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