FC872155

Overview
NameFC872155
Unique NameFC872155
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_SCHJA (60S ribosomal protein L24 OS=Schistosoma japonicum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            +K E+C +SG K+YPG G R IR D + F F N K +R  + +  P +++WT +YR+++KK ++ E  K +     K  +R I GA+L  I  +R +KPEVR A R+ A+R  KE+
Sbjct:    1 MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSEEQTKNELSVLTKT-ARGIAGASLAEIMAKRNQKPEVRKAMRDQAIRAAKEK 115          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_SCHPO (Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe GN=rlp24 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI---AAEAVKKKRRSTKKPYSRSIVGATLEVIQK 315
            ++   C F    +YPG GI F+R+DS+VF F  SKC + F  +  P K+ WT  YRK H K++    A AV   RR+    Y R+++  TL  +++
Sbjct:    1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKR 96          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_DROME (Probable ribosome biogenesis protein RLP24 OS=Drosophila melanogaster GN=CG6764 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEA--VKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVR 342
            ++ + C F  +KIYPG G++F+R+D +VF F   KC + F  +  P K+ WT  YRK   K++A +     +KRR+    YSR      LE I KR TE  E R
Sbjct:    1 MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAI-KRVTEIKEKR 103          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAV--KKKRRSTKKPYSRSIVGATLEVIQK 315
            ++ E C F  + IYPG GI+F+R+D+++F F  SKC + F  +  P K+ WT  +R  H KD+  +     +K+R+  + Y R++   TL  I+K
Sbjct:    1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKK 95          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_YARLI (Ribosome biogenesis protein RLP24 OS=Yarrowia lipolytica GN=RLP24 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   52 CRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQK 315
            C F  + +YPGKGI F+R+DS+ F F  SKC + F  +  P KL WT  +RK   K++  ++      RR     Y+R +V  TLE ++K
Sbjct:    6 CHFCSSPVYPGKGIMFVRNDSKEFRFCRSKCHKNFKMKRNPRKLRWTKAFRKAAGKEMVVDSTLAFSARRDVPVRYNRDLVEKTLEAMEK 95          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAE--AVKKKRRSTKKPYSRSIVGATLEVIQK 315
            ++ E C F  A +YPG G+ F+R+D +VF F  SKC + F  +  P K  WT  +RK   K++  +     +KRR+T   Y+R +   T+E ++K
Sbjct:    1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRK 95          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_CANGA (Ribosome biogenesis protein RLP24 OS=Candida glabrata GN=RLP24 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   52 CRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQK 315
            C F  + +YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR+    Y+R +V  TL+ + +
Sbjct:    6 CHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSR 95          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_KLULA (Ribosome biogenesis protein RLP24 OS=Kluyveromyces lactis GN=RLP24 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 41/128 (32.03%), Postives = 62/128 (48.44%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQ--------------KRRTEKPEVRDAAREAALRE 372
            ++   C F  +  YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR+    Y+R +V  TL+ +               K R +    RD  R+ AL E
Sbjct:    1 MRVYACHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLRWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSRIEEIRQRRERAFYKNRMKGNNERDFLRDKALVE 128          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_ASHGO (Ribosome biogenesis protein RLP24 OS=Ashbya gossypii GN=RLP24 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 38/105 (36.19%), Postives = 55/105 (52.38%), Query Frame = 1
Query:   52 CRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREA 360
            C F  + +YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR+    Y+R +V  TL    K  T   E+R     A
Sbjct:    6 CHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVETTL----KAMTRIEEIRQKRERA 106          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_YEAST (Ribosome biogenesis protein RLP24 OS=Saccharomyces cerevisiae GN=RLP24 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 1
Query:   52 CRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            C F  +  YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR+    Y+R +V  TL+ + +    + +   A  +  +R  KE+
Sbjct:    6 CHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMARIEEIRQKRERAFYKNRMRGNKEK 118          
The following BLAST results are available for this feature:
BLAST of FC872155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL24_SCHJA2.254e-1940.5260S ribosomal protein L24 OS=Schistosoma japonicum... [more]
RLP24_SCHPO2.851e-1437.50Ribosome biogenesis protein rlp24 OS=Schizosacchar... [more]
RLP24_DROME3.152e-1339.42Probable ribosome biogenesis protein RLP24 OS=Dros... [more]
RLP24_ARATH4.117e-1335.79Probable ribosome biogenesis protein RLP24 OS=Arab... [more]
RLP24_YARLI7.023e-1338.89Ribosome biogenesis protein RLP24 OS=Yarrowia lipo... [more]
RLP24_DANRE1.198e-1235.79Probable ribosome biogenesis protein RLP24 OS=Dani... [more]
RLP24_CANGA1.565e-1236.67Ribosome biogenesis protein RLP24 OS=Candida glabr... [more]
RLP24_KLULA2.669e-1232.03Ribosome biogenesis protein RLP24 OS=Kluyveromyces... [more]
RLP24_ASHGO2.669e-1236.19Ribosome biogenesis protein RLP24 OS=Ashbya gossyp... [more]
RLP24_YEAST3.485e-1232.74Ribosome biogenesis protein RLP24 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC05701C06SK AbsCOv1 Citrus clementina cDNA clone C05701C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872155 ID=FC872155; Name=FC872155; organism=Citrus clementina; type=EST; length=616bp
GGGGGTGCCGCGCAATCGACATCAGAAGCCATGGTTCTCAAGACTGAACT
GTGCCGCTTTAGTGGTGCCAAGATTTATCCTGGCAAGGGTATCAGATTCA
TTCGCTCTGATTCCCAGGTTTTCCTCTTTGCCAATTCAAAATGCAAGAGG
TACTTCCACAACCGCTTGAAGCCATCAAAGCTTACATGGACTTCCATGTA
CAGGAAACAACACAAGAAGGATATTGCTGCTGAGGCTGTAAAGAAGAAGC
GCCGCTCCACAAAGAAGCCATATTCAAGGTCTATTGTCGGTGCAACCTTG
GAAGTCATACAGAAGAGGAGGACTGAAAAGCCTGAAGTTCGAGATGCTGC
TCGTGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAGAAGACCAAAG
ATGAAAAGAGGGCCAAGAAAGCTGAGGTGACATCCAAGTCAAAGACTCAA
AGCAAGGGTAGCATGCCCAAGGGTGCCGCTCCGAAGGGCCCCAAGCTTGG
TGGTGGTGGTGGAAAACGGTGAAGTGCTTCATCTCTTCATTTCTTCCTGA
CTACTATCTTAAACAATTAATATATTTATTCCATATTTTGTGAATGGATT
GGTCAATACTTGAGGG
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