FC872155
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_SCHJA (60S ribosomal protein L24 OS=Schistosoma japonicum GN=RPL24 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19 Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 1 Query: 37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384 +K E+C +SG K+YPG G R IR D + F F N K +R + + P +++WT +YR+++KK ++ E K + K +R I GA+L I +R +KPEVR A R+ A+R KE+ Sbjct: 1 MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSEEQTKNELSVLTKT-ARGIAGASLAEIMAKRNQKPEVRKAMRDQAIRAAKEK 115
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_SCHPO (Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe GN=rlp24 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14 Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1 Query: 37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI---AAEAVKKKRRSTKKPYSRSIVGATLEVIQK 315 ++ C F +YPG GI F+R+DS+VF F SKC + F + P K+ WT YRK H K++ A AV RR+ Y R+++ TL +++ Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKR 96
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_DROME (Probable ribosome biogenesis protein RLP24 OS=Drosophila melanogaster GN=CG6764 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13 Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1 Query: 37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEA--VKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVR 342 ++ + C F +KIYPG G++F+R+D +VF F KC + F + P K+ WT YRK K++A + +KRR+ YSR LE I KR TE E R Sbjct: 1 MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAI-KRVTEIKEKR 103
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13 Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 1 Query: 37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAV--KKKRRSTKKPYSRSIVGATLEVIQK 315 ++ E C F + IYPG GI+F+R+D+++F F SKC + F + P K+ WT +R H KD+ + +K+R+ + Y R++ TL I+K Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKK 95
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_YARLI (Ribosome biogenesis protein RLP24 OS=Yarrowia lipolytica GN=RLP24 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13 Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1 Query: 52 CRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQK 315 C F + +YPGKGI F+R+DS+ F F SKC + F + P KL WT +RK K++ ++ RR Y+R +V TLE ++K Sbjct: 6 CHFCSSPVYPGKGIMFVRNDSKEFRFCRSKCHKNFKMKRNPRKLRWTKAFRKAAGKEMVVDSTLAFSARRDVPVRYNRDLVEKTLEAMEK 95
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12 Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 1 Query: 37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAE--AVKKKRRSTKKPYSRSIVGATLEVIQK 315 ++ E C F A +YPG G+ F+R+D +VF F SKC + F + P K WT +RK K++ + +KRR+T Y+R + T+E ++K Sbjct: 1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRK 95
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_CANGA (Ribosome biogenesis protein RLP24 OS=Candida glabrata GN=RLP24 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1 Query: 52 CRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQK 315 C F + +YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR+ Y+R +V TL+ + + Sbjct: 6 CHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSR 95
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_KLULA (Ribosome biogenesis protein RLP24 OS=Kluyveromyces lactis GN=RLP24 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 41/128 (32.03%), Postives = 62/128 (48.44%), Query Frame = 1 Query: 37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQ--------------KRRTEKPEVRDAAREAALRE 372 ++ C F + YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR+ Y+R +V TL+ + K R + RD R+ AL E Sbjct: 1 MRVYACHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLRWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSRIEEIRQRRERAFYKNRMKGNNERDFLRDKALVE 128
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_ASHGO (Ribosome biogenesis protein RLP24 OS=Ashbya gossypii GN=RLP24 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 38/105 (36.19%), Postives = 55/105 (52.38%), Query Frame = 1 Query: 52 CRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREA 360 C F + +YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR+ Y+R +V TL K T E+R A Sbjct: 6 CHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVETTL----KAMTRIEEIRQKRERA 106
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RLP24_YEAST (Ribosome biogenesis protein RLP24 OS=Saccharomyces cerevisiae GN=RLP24 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12 Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 1 Query: 52 CRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVK--KKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384 C F + YPG GI F+R+D++ F F SKC + F R P KL WT +RK K++A ++ +RR+ Y+R +V TL+ + + + + A + +R KE+ Sbjct: 6 CHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMARIEEIRQKRERAFYKNRMRGNKEK 118 The following BLAST results are available for this feature:
BLAST of FC872155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872155 ID=FC872155; Name=FC872155; organism=Citrus clementina; type=EST; length=616bpback to top |