FC872321

Overview
NameFC872321
Unique NameFC872321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.425e-36
Identity = 74/131 (56.49%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 390
            QIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+ E+ R V    G+ALADE GI F ETSAK   NVE+ F ++A +IK R+A     + ++P T+++
Sbjct:   60 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAEN-RVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQM 189          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.425e-36
Identity = 71/111 (63.96%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 336
            Q+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:   60 QVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.425e-36
Identity = 71/111 (63.96%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 336
            Q+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:   60 QVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.403e-36
Identity = 71/111 (63.96%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 336
            Q+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:   60 QVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.204e-35
Identity = 71/116 (61.21%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 351
            QIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK+D+  SK+ V  S  +A ADE GI F ETSAK   NVE+ F ++A +IK R+A
Sbjct:   60 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDL-TSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMA 174          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.204e-35
Identity = 75/133 (56.39%), Postives = 101/133 (75.94%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 402
            Q+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   + + LA E+ I+FFETSAK+++NV+E F S+ARDI   L  T  R    + K +  D
Sbjct:   60 QVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI---LLKTGGRRSGNSSKPSSTD 188          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.572e-35
Identity = 70/111 (63.06%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 336
            Q+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   + + LA E+ I+FFETSAK+++NV+E F S+ARDI
Sbjct:   60 QVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.572e-35
Identity = 69/123 (56.10%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE 372
            QIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI+QHA+++V ++L+ NK DMD  KR VP  KG+ +A E+ I+FFETSAK N+N+E+ F ++  DI ++    +  +E
Sbjct:   61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSE 182          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.802e-35
Identity = 70/124 (56.45%), Postives = 93/124 (75.00%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 375
            QIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK+D+   K+ V     +A ADE GI F ETSAK   NVE+ F ++A +IK R+A      +P
Sbjct:   60 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDL-TGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKP 182          
BLAST of FC872321 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.738e-34
Identity = 69/131 (52.67%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    4 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ-TIKIN 393
            QIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD+ GI F ETSAK   NVE+ F ++A +IK R+    + ++ + ++KIN
Sbjct:   63 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKIN 192          
The following BLAST results are available for this feature:
BLAST of FC872321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIC1_ORYSJ2.425e-3656.49Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB13_HUMAN2.425e-3663.96Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN2.425e-3663.96Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB13_MESAU5.403e-3663.96Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
YPTC1_CHLRE1.204e-3561.21GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB13_RAT1.204e-3556.39Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_MOUSE1.572e-3563.06Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB10_RAT1.572e-3556.10Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
YPTV1_VOLCA7.802e-3556.45GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1A_LYMST1.738e-3452.67Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DE05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872321 ID=FC872321; Name=FC872321; organism=Citrus clementina; type=EST; length=788bp
GGGCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAAC
CGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCG
ACGAGTCATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAG
CATGCATCTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACAT
GGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTG
ATGAATATGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAAT
GTGGAGGAGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGC
AGATACAGACTCTAGGGCTGAGCCTCAGACTATCAAAATTAACCAACCTG
ACCAGGCAGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGT
TCTTAAGCAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAAT
CATTTTGGTTGGGACAACTAATTTTGTCAACTATATCATTGGTGCTTGTA
TTGTTCTATCATTATTTTACAACTACCACACGCTTGCTTGTGAATGATAG
ATCATCTGTGTTTGGCATTAATTATATTATATTAGTTTCTTTCATTTCTT
TTGTTCCTTGTGCTGAAAAACCATGTAATGCCTGTTATTTTGCTTTTTCG
ATACTGAGAATTAAATAGAAGCAGCCTTCTTTTCTCTGATGCGCTTGACG
GCTTTGCAATGGTGATATGAGAAAGGCCTTGAACATTT
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