FC872357

Overview
NameFC872357
Unique NameFC872357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B_DROSI (Histone H2B OS=Drosophila simulans GN=His2B PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B_DROSE (Histone H2B OS=Drosophila sechellia GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B_DROOR (Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B_DROME (Histone H2B OS=Drosophila melanogaster GN=His2B PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B_DROMA (Histone H2B OS=Drosophila mauritiana GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B_DROHY (Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B_DROER (Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B_ANOGA (Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=2 SV=5)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 74/89 (83.15%), Postives = 84/89 (94.38%), Query Frame = 2 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 499
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
[Close]
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B_CAIMO (Histone H2B OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.560e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVR +LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRSLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of FC872357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_DROSI1.195e-3684.44Histone H2B OS=Drosophila simulans GN=His2B PE=3 S... [more]
H2B_DROSE1.195e-3684.44Histone H2B OS=Drosophila sechellia GN=His2B PE=3 ... [more]
H2B_DROOR1.195e-3684.44Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3[more]
H2B_DROME1.195e-3684.44Histone H2B OS=Drosophila melanogaster GN=His2B PE... [more]
H2B_DROMA1.195e-3684.44Histone H2B OS=Drosophila mauritiana GN=His2B PE=3... [more]
H2B_DROHY1.195e-3684.44Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2[more]
H2B_DROER1.195e-3684.44Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=... [more]
H2B_ANOGA1.195e-3684.44Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=... [more]
H2B1C_HUMAN1.195e-3683.15Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]
H2B_CAIMO1.560e-3683.33Histone H2B OS=Cairina moschata PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DG10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872357 ID=FC872357; Name=FC872357; organism=Citrus clementina; type=EST; length=712bp
GGGGGACCCGAACTCCTAATATCATTTTCTATCAAATTCAGAAGAATCTT
CTCACGCCCTTCAGTTTTTCTCGTCAAAAGGAACGATGGCGCCGAAAGCC
GAGAAGAAGCCAGCGGAGAAAAAGCCGGTAGCCGAGAAAGCCCCAGCCGA
GAAGAGGCCGAAAGCCGAGAAGAAGATCTCGAAAGATGGCGGCGGCGTCG
AGAAAAAGAAGAGGAAGTTGAAGAAGAATGTGGAGACGTACAAGATCTAC
ATTTTCAAGGTCCTGAAGCAGGTTCATCCCGATATCGGTATCTCCAGCAA
GGCCATGGGCATCATGAACAGTTTCATCAACGATATCTTCGAGAAATTAG
CCCAAGAGGCGTCTCGTCTCGCTAGGTACAACAAGAAGCCGACGATCACG
TCGAGGGAGATCCAGACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGC
CAAGCACGCCGTGTCGGAGGGGACCAAGGCCGTTACCAAGTTCACGAGCT
CTTGATTTTGTGCAATTTTTTGTCTTGTTAGTGTTCCGTGTTCTTTTGAA
ATTGTTCCTTTCGTTACTTTTTAGCCGCCCCGCCTAGCCTAGGGTTTGCT
CCTGTTAATGCTTCTTATGGACAGATTAATGAAAACTTATTGTCTTCTAA
AATCGTGATCTGATTCTCTTTGGGTTCTGACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
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