FC872357

Overview
NameFC872357
Unique NameFC872357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B_TOBAC (Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 6.121e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 2
Query:  227 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            +VETYKIYIF+VLK VHPDIGISSKAMGIMNSFINDIFEKLA+E+SRLA YNKKPTI+SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   55 SVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARESSRLAGYNKKPTISSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 146          
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 6.121e-41
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 2
Query:  230 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSJ (Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  188 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   49 GEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSI (Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  188 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   49 GEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSJ (Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  188 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   49 GEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSI (Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  188 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   49 GEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSJ (Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  188 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   49 GEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSI (Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  188 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   49 GEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSJ (Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.044e-40
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 2
Query:  227 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC872357 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSI (Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.044e-40
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 2
Query:  227 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
The following BLAST results are available for this feature:
BLAST of FC872357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_TOBAC6.121e-4192.39Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=... [more]
H2B2_WHEAT6.121e-4193.41Histone H2B.2 OS=Triticum aestivum PE=1 SV=2[more]
H2B7_ORYSJ7.995e-4181.90Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B7_ORYSI7.995e-4181.90Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B4_ORYSJ7.995e-4181.90Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B4_ORYSI7.995e-4181.90Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B10_ORYSJ7.995e-4181.90Histone H2B.10 OS=Oryza sativa subsp. japonica GN=... [more]
H2B10_ORYSI7.995e-4181.90Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B3_ORYSJ1.044e-4091.30Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B3_ORYSI1.044e-4091.30Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DG10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872357 ID=FC872357; Name=FC872357; organism=Citrus clementina; type=EST; length=712bp
GGGGGACCCGAACTCCTAATATCATTTTCTATCAAATTCAGAAGAATCTT
CTCACGCCCTTCAGTTTTTCTCGTCAAAAGGAACGATGGCGCCGAAAGCC
GAGAAGAAGCCAGCGGAGAAAAAGCCGGTAGCCGAGAAAGCCCCAGCCGA
GAAGAGGCCGAAAGCCGAGAAGAAGATCTCGAAAGATGGCGGCGGCGTCG
AGAAAAAGAAGAGGAAGTTGAAGAAGAATGTGGAGACGTACAAGATCTAC
ATTTTCAAGGTCCTGAAGCAGGTTCATCCCGATATCGGTATCTCCAGCAA
GGCCATGGGCATCATGAACAGTTTCATCAACGATATCTTCGAGAAATTAG
CCCAAGAGGCGTCTCGTCTCGCTAGGTACAACAAGAAGCCGACGATCACG
TCGAGGGAGATCCAGACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGC
CAAGCACGCCGTGTCGGAGGGGACCAAGGCCGTTACCAAGTTCACGAGCT
CTTGATTTTGTGCAATTTTTTGTCTTGTTAGTGTTCCGTGTTCTTTTGAA
ATTGTTCCTTTCGTTACTTTTTAGCCGCCCCGCCTAGCCTAGGGTTTGCT
CCTGTTAATGCTTCTTATGGACAGATTAATGAAAACTTATTGTCTTCTAA
AATCGTGATCTGATTCTCTTTGGGTTCTGACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
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