FC872390

Overview
NameFC872390
Unique NameFC872390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.495e-25
Identity = 63/142 (44.37%), Postives = 91/142 (64.08%), Query Frame = 2
Query:   26 KEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE QR  +   P I+   D+SN   +  +I GP  +P+EGG F+L   +PE+YP+  P+VRF+TKI+HPNV  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL  D     ++ + +  ++ AR +TRL AM
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIET-ARAWTRLYAM 149          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.495e-25
Identity = 63/142 (44.37%), Postives = 91/142 (64.08%), Query Frame = 2
Query:   26 KEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE QR  +   P I+   D+SN   +  +I GP  +P+EGG F+L   +PE+YP+  P+VRF+TKI+HPNV  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL  D     ++ + +  ++ AR +TRL AM
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIET-ARAWTRLYAM 149          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.495e-25
Identity = 63/142 (44.37%), Postives = 91/142 (64.08%), Query Frame = 2
Query:   26 KEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE QR  +   P I+   D+SN   +  +I GP  +P+EGG F+L   +PE+YP+  P+VRF+TKI+HPNV  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL  D     ++ + +  ++ AR +TRL AM
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIET-ARAWTRLYAM 149          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.495e-25
Identity = 61/150 (40.67%), Postives = 92/150 (61.33%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQLVCDDS--NIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            R + KE KE+QR    DP +      +  ++F W A I GP+++PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK+ WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   +++MAR +T+  A+
Sbjct:    4 RRILKELKELQR----DPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNIN-SNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKT-DKTKYEAMARSWTQKYAL 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.330e-25
Identity = 58/146 (39.73%), Postives = 90/146 (61.64%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            + KE K++Q++  ++     V +D  +F W A I GP ++PY GGVF ++   P  YP +PP+V F TK++HPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   ++S AR +T+  AM
Sbjct:    6 ILKELKDLQKDPPSNCSAGPVAED--MFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRSKYESTARSWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.349e-25
Identity = 58/146 (39.73%), Postives = 88/146 (60.27%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            + KE K++Q++         V +D  +F W A I GP+++PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   +++ AR +T+  AM
Sbjct:    6 ILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYEATARNWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.349e-25
Identity = 62/141 (43.97%), Postives = 91/141 (64.54%), Query Frame = 2
Query:   26 KEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 445
            KE QR  S   P I     + N+  +  +I GP+++PYEGGVF+L   +PE+YP+  P+VRFLTKI+HPN+  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL+ +     +S +    ++ A+ +TRL A
Sbjct:   12 KETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVET-AKEWTRLYA 150          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.680e-25
Identity = 58/146 (39.73%), Postives = 88/146 (60.27%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            + KE K++Q++         V +D  +F W A I GP+ +PY GGVF ++   P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   +++ AR +T+  AM
Sbjct:    6 ILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYETTARSWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 7.419e-25
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 2
Query:   17 KEYKEVQR-EKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 445
            +E+KEV + E+++   I++   D N  +    I GP  TPYEGG +QL   +PE YP  PP+VRF+TKI+HPN+   TG ICLDILK+ W+ A TL++V  ++ AL+A  EPD P +    N  +      F+  AR++  + A
Sbjct:   11 REFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP-EMFKQTARLWAHVYA 153          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 7.419e-25
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 2
Query:   17 KEYKEVQR-EKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 445
            +E+KEV + E+++   I++   D N  +    I GP  TPYEGG +QL   +PE YP  PP+VRF+TKI+HPN+   TG ICLDILK+ W+ A TL++V  ++ AL+A  EPD P +    N  +      F+  AR++  + A
Sbjct:   11 REFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP-EMFKQTARLWAHVYA 153          
The following BLAST results are available for this feature:
BLAST of FC872390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
UBE2N_MOUSE1.495e-2544.37Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN1.495e-2544.37Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.495e-2544.37Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC29_ARATH1.495e-2540.67Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC11_ARATH3.330e-2539.73Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC8_ARATH4.349e-2539.73Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC36_ARATH4.349e-2543.97Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC4_SOLLC5.680e-2539.73Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBE2K_MOUSE7.419e-2541.67Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN7.419e-2541.67Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872390 ID=FC872390; Name=FC872390; organism=Citrus clementina; type=EST; length=793bp
CGGGCGGGGGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAG
CTGACCCAGACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGG
ACTGCTCTTATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATT
CCAGCTTGCTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAG
TGCGGTTTTTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGA
GAGATATGCCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCT
TCAGTCTGTTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTG
ATAGTCCACTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATA
AGAGGATTTCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCC
AAAGAAGGGGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAG
CGTGATGTTATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATC
CAGAGATTTTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCT
ATTTTCATTGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGA
CCGTGCCAAGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATT
ATAACATTTGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTT
ATTATTTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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