FC872390
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.693e-17 Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = 2 Query: 77 DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388 DD++I+KW L+ GP T YEGG F+ P YP +PP+++F+++I+HPN+ K G +C+ IL + W P T++++ ++I+++ P +SP N D+ + R Sbjct: 29 DDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNID-KEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQR 144
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17 Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 2 Query: 5 RGLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388 + L E K +Q E + LV D+ +++ W I GP T YEGG F+ P YP PP RFLTK++HPN+ ++TG++C+ IL W+P ++++ ++I+L+ P SP N D+ + R Sbjct: 11 KALLLELKGLQEEPVEGFRVTLV-DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 149
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17 Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 2 Query: 5 RGLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388 + L E K +Q E + LV D+ +++ W I GP T YEGG F+ P YP PP RFLTK++HPN+ ++TG++C+ IL W+P ++++ ++I+L+ P SP N D+ + R Sbjct: 11 KALLLELKGLQEEPVEGFRVTLV-DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 149
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17 Identity = 45/137 (32.85%), Postives = 76/137 (55.47%), Query Frame = 2 Query: 50 ADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAII-ALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPKK 457 +D + V DD +F T GP+ + Y+GGV+++ +PE YP + P V F+ KI+HPNV +G +CLD++ WSP + L +V + + L+ +P P P N ++ +LL D ++ + Y A P++ Sbjct: 18 SDYKVDTVNDDLQMFYVT--FHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMR-DRAAYELKVKEYCEKYAKPEE 151
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17 Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 2 Query: 5 RGLFKEYKEVQREKSADPD-IQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRS 391 R + EY ++ +K+ D Q+ D NIF W IKGP + YE F+L + YP P+V+F+T I H NV+ K G+ICL+IL K+ W+ + + S+ +II L+ P P+ P N + +L R+ Sbjct: 7 RRIQNEYNKINNDKNLYADSFQINMVDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDK-GDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRN 136
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.268e-16 Identity = 38/111 (34.23%), Postives = 65/111 (58.56%), Query Frame = 2 Query: 77 DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICL------------DILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDS 373 DDSN+F+W I GP +T Y+GG F + P+ YP PP VRF ++++HPNV + G +C+ ++ W+P T++S+ +II++++ P +SP N ++ Sbjct: 33 DDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNV-YPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEA 142
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.268e-16 Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 2 Query: 86 NIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 361 NI++W + I GP + YEGGVF L +YP +PP+V F T+I+H N++ G ICLDILK+ WSPA T+ V +I +L+ P PL Sbjct: 75 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 165
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.268e-16 Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 2 Query: 86 NIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 361 NI++W + I GP + YEGGVF L +YP +PP+V F T+I+H N++ G ICLDILK+ WSPA T+ V +I +L+ P PL Sbjct: 75 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 165
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16 Identity = 47/124 (37.90%), Postives = 68/124 (54.84%), Query Frame = 2 Query: 5 RGLFKEYKEVQREKSA-----DPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 361 R L K +Q+E + P+ N+++W + I GP + YEGGVF L +YP +PP+V F T+I+H N++ G ICLDILK+ WSPA T+ V +I +L+ P PL Sbjct: 82 RALGTSAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 204
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16 Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 2 Query: 77 DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDS 373 D+ NIF+W+ I GP T YEGG F + P+ YP PP VRF + I+HPNV + G +C+ IL W+P T++S+ +II++++ P +SP N ++ Sbjct: 30 DEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNV-YPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEA 140 The following BLAST results are available for this feature:
BLAST of FC872390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872390 ID=FC872390; Name=FC872390; organism=Citrus clementina; type=EST; length=793bpback to top |