FC872390

Overview
NameFC872390
Unique NameFC872390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.693e-17
Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = 2
Query:   77 DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388
            DD++I+KW  L+ GP  T YEGG F+     P  YP +PP+++F+++I+HPN+  K G +C+ IL             +  W P  T++++  ++I+++  P  +SP N D+  + R
Sbjct:   29 DDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNID-KEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQR 144          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388
            + L  E K +Q E      + LV D+ +++ W   I GP  T YEGG F+     P  YP  PP  RFLTK++HPN+ ++TG++C+ IL                W+P   ++++  ++I+L+  P   SP N D+  + R
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLV-DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 149          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388
            + L  E K +Q E      + LV D+ +++ W   I GP  T YEGG F+     P  YP  PP  RFLTK++HPN+ ++TG++C+ IL                W+P   ++++  ++I+L+  P   SP N D+  + R
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLV-DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 149          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 45/137 (32.85%), Postives = 76/137 (55.47%), Query Frame = 2
Query:   50 ADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAII-ALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPKK 457
            +D  +  V DD  +F  T    GP+ + Y+GGV+++   +PE YP + P V F+ KI+HPNV   +G +CLD++   WSP + L +V  + +  L+ +P P  P N ++ +LL   D   ++   + Y    A P++
Sbjct:   18 SDYKVDTVNDDLQMFYVT--FHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMR-DRAAYELKVKEYCEKYAKPEE 151          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPD-IQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRS 391
            R +  EY ++  +K+   D  Q+   D NIF W   IKGP  + YE   F+L   +   YP   P+V+F+T I H NV+ K G+ICL+IL K+ W+ +  + S+  +II L+  P P+ P N +  +L R+
Sbjct:    7 RRIQNEYNKINNDKNLYADSFQINMVDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDK-GDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRN 136          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.268e-16
Identity = 38/111 (34.23%), Postives = 65/111 (58.56%), Query Frame = 2
Query:   77 DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICL------------DILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDS 373
            DDSN+F+W   I GP +T Y+GG F    + P+ YP  PP VRF ++++HPNV +  G +C+            ++    W+P  T++S+  +II++++ P  +SP N ++
Sbjct:   33 DDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNV-YPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEA 142          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.268e-16
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 2
Query:   86 NIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 361
            NI++W + I GP  + YEGGVF L      +YP +PP+V F T+I+H N++   G ICLDILK+ WSPA T+  V  +I +L+    P  PL
Sbjct:   75 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 165          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.268e-16
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 2
Query:   86 NIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 361
            NI++W + I GP  + YEGGVF L      +YP +PP+V F T+I+H N++   G ICLDILK+ WSPA T+  V  +I +L+    P  PL
Sbjct:   75 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 165          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 47/124 (37.90%), Postives = 68/124 (54.84%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSA-----DPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 361
            R L    K +Q+E +       P+        N+++W + I GP  + YEGGVF L      +YP +PP+V F T+I+H N++   G ICLDILK+ WSPA T+  V  +I +L+    P  PL
Sbjct:   82 RALGTSAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 204          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 2
Query:   77 DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDS 373
            D+ NIF+W+  I GP  T YEGG F    + P+ YP  PP VRF + I+HPNV +  G +C+ IL                W+P  T++S+  +II++++ P  +SP N ++
Sbjct:   30 DEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNV-YPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEA 140          
The following BLAST results are available for this feature:
BLAST of FC872390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
UBC7_CAEEL5.693e-1733.33Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UB2R1_MOUSE7.436e-1732.62Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN7.436e-1732.62Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC6_ARATH9.711e-1732.85Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC1_MIMIV9.711e-1736.64Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC7_WHEAT1.268e-1634.23Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UB2E1_MOUSE1.268e-1645.65Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN1.268e-1645.65Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBCD2_DROME1.657e-1637.90Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC13_ARATH1.657e-1636.61Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872390 ID=FC872390; Name=FC872390; organism=Citrus clementina; type=EST; length=793bp
CGGGCGGGGGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAG
CTGACCCAGACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGG
ACTGCTCTTATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATT
CCAGCTTGCTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAG
TGCGGTTTTTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGA
GAGATATGCCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCT
TCAGTCTGTTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTG
ATAGTCCACTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATA
AGAGGATTTCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCC
AAAGAAGGGGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAG
CGTGATGTTATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATC
CAGAGATTTTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCT
ATTTTCATTGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGA
CCGTGCCAAGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATT
ATAACATTTGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTT
ATTATTTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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