FC872390

Overview
NameFC872390
Unique NameFC872390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9938 contig Ccv1_Contig9938:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 7.419e-25
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 2
Query:   17 KEYKEVQR-EKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 445
            +E+KEV + E+++   I++   D N  +    I GP  TPYEGG +QL   +PE YP  PP+VRF+TKI+HPN+   TG ICLDILK+ W+ A TL++V  ++ AL+A  EPD P +    N  +      F+  AR++  + A
Sbjct:   11 REFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP-EMFKQTARLWAHVYA 153          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.419e-25
Identity = 62/141 (43.97%), Postives = 90/141 (63.83%), Query Frame = 2
Query:   26 KEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 445
            KE QR  S   P I     + N+  +  +I GP+++PYEGGVF+L   +PE+YP+  P+VRFLTKI+HPN+  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL+ +     +S +     + A+ +TRL A
Sbjct:   12 KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDT-AKEWTRLYA 150          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.419e-25
Identity = 52/128 (40.62%), Postives = 85/128 (66.41%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388
            R L +++K +Q++  +      + D  N+ KW A+I GPS TP+E G F+L  +  EQYP +PPQV+F++++FHPNV + +GE+CLDIL+N WSP + + S+  ++ +L+  P   SP N ++ NL +
Sbjct:    7 RRLMRDFKRMQQDPPSGVSASPLPD--NVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNV-YASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYK 131          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.265e-24
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE  ++QR+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F TKI+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +  +  ++ D   +  +AR +T+  AM
Sbjct:    8 KELTDLQRDPPAQCSAGPVGDD--LFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKA-DREKYNRLAREWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 54/128 (42.19%), Postives = 82/128 (64.06%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388
            R L +++K +Q +  A      V D  N+  W A+I GP+ TP+E G F+L     EQYP +PPQV+F++++FHPNV + TGE+CLDIL+N WSP + + +V  +I +L+  P   SP N ++ NL +
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVPD--NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNV-YATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYK 131          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE +++ R+  A      V DD  +F W A I GP  +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  +AR +TR  AM
Sbjct:    8 KELQDLGRDPPAQCSAGPVGDD--LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNELAREWTRKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.819e-24
Identity = 62/185 (33.51%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   11 LFKEYKEV---QREKSADP--------DIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLT----------------------------------KIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMY 430
            L +EY+ +   QR+K +          D++ V +D N +KWTA +KGP+ T Y+   ++L   +P  YP QPP+  F+                                   ++ HPN+ F TGEICLDIL+  W+PAWTL S   AI+ L+  PEP SPL+ D  NL++  D++ + S+   Y
Sbjct:    7 LLQEYRSILKEQRQKGSASTLSSNGILDLKPVSED-NFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLKAYNSLIEYY 190          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 56/148 (37.84%), Postives = 93/148 (62.84%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            R + KE + + +E    P I  + D++N   +  ++ GP+ +P+EGGVF+L   +PE YP+  P+VRF+TKI+HPN+  + G ICLD+LK+ WSPA  ++++  +I AL++ P PD PL  D   L +  +    ++ AR +T+  A+
Sbjct:    6 RRIIKETQRLMQEPV--PGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNID-RLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRN-AREWTQKYAV 149          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 53/128 (41.41%), Postives = 81/128 (63.28%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388
            R L +++K +Q +  A      V D  N+  W A+I GP+ TP+E G F+L     EQYP +PP V+F++++FHPNV + TGE+CLDIL+N WSP + + ++  +I +L+  P   SP N ++ NL R
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVAD--NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNV-YGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYR 131          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 58/144 (40.28%), Postives = 86/144 (59.72%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE +++ R+  A      V DD  +F W A I GP ++PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  +AR +T+  AM
Sbjct:    8 KELQDLGRDPPAQCSAGPVGDD--LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRERYNQLAREWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of FC872390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
UBE2K_BOVIN7.419e-2541.67Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC35_ARATH7.419e-2543.97Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC2_CANAL7.419e-2540.63Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UB2D4_HUMAN1.265e-2441.67Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC2_NECHA1.653e-2442.19Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBCD1_DROME2.158e-2440.97Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBCX_PICPA2.819e-2433.51Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]
UBE2N_DROME3.682e-2437.84Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC2_EMENI3.682e-2441.41Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_CAEEL3.682e-2440.28Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872390 ID=FC872390; Name=FC872390; organism=Citrus clementina; type=EST; length=793bp
CGGGCGGGGGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAG
CTGACCCAGACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGG
ACTGCTCTTATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATT
CCAGCTTGCTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAG
TGCGGTTTTTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGA
GAGATATGCCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCT
TCAGTCTGTTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTG
ATAGTCCACTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATA
AGAGGATTTCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCC
AAAGAAGGGGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAG
CGTGATGTTATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATC
CAGAGATTTTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCT
ATTTTCATTGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGA
CCGTGCCAAGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATT
ATAACATTTGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTT
ATTATTTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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