FC872390

Overview
NameFC872390
Unique NameFC872390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9938 contig Ccv1_Contig9938:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 39/116 (33.62%), Postives = 56/116 (48.28%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTG-EICL---DILKNAWSPAWTLQSVCRAIIALMAHPE 346
            L KEYK +    +  P I     + NI +W  +I GP  TPYE G +      P  YP  PP +R +T    PN  FK    +CL   D    AW+PAW++ ++   +++ M   E
Sbjct:   10 LTKEYKNIVN--NPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMIT----PNGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMTGDE 119          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 42/120 (35.00%), Postives = 62/120 (51.67%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTG-EICLDILK---NAWSPAWTLQSVCRAIIALMAHPEPDSP 358
            + +E KE+Q   S   D   +  + NIF+W   I+GP  T +EGG++     +P  YP +PP    LT    PN  F+T  +ICL I       W P+W++++   A+IA M    P SP
Sbjct:   16 ILQEVKEMQANPS--DDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLT----PNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFM----PTSP 125          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 33/85 (38.82%), Postives = 52/85 (61.18%), Query Frame = 2
Query:   86 NIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKI-FHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMA 337
            N+ +W   + G   T Y    +QL    PE YP++ PQV FL     HP++ +  G ICLDIL ++WSPA T+ S+C +I+++++
Sbjct:   42 NLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHI-YSNGHICLDILYDSWSPAMTVSSICISILSMLS 125          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 31/87 (35.63%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  119 PSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGN 379
            P +  Y+GG F+ +F V   +P +PP+V+ L K++HPN+  + G +CL+IL+  W P  +L +V   +  L   P    PLN D+ +
Sbjct:   61 PDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLE-GNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAH 146          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.574e-11
Identity = 35/108 (32.41%), Postives = 56/108 (51.85%), Query Frame = 2
Query:   80 DSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIR 403
            D N  +    IK P    Y GG +     + + YP++PP V+ + +I+HPN+    G +CL++L+  W+PA  +QS+   I+ L   P    PLN D+   L    +R
Sbjct:   55 DENPMRVNLAIK-PDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDID-GNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAKTLIEDPLR 160          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIF--HPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMA 337
            L KE   +Q +      +      ++I +W   ++G   T YEG  FQL F    +YP   PQV F  +    HP+V +  G ICL IL   WSPA ++QSVC +II++++
Sbjct:    8 LQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHV-YSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIF--HPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMA 337
            L KE   +Q +      +      ++I +W   ++G   T YEG  FQL F    +YP   PQV F  +    HP+V +  G ICL IL   WSPA ++QSVC +II++++
Sbjct:    8 LQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV-YSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 37/116 (31.90%), Postives = 60/116 (51.72%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTG-EICL---DILKNAWSPAWTLQSVCRAIIALMAHPE 346
            L KEYK +   ++  P I    ++ NI +W  +I GP+ TPY+GG +      P  YP +PP +R +T    PN  FK    +CL   D   + W+P W++ ++   +++ M   E
Sbjct:   10 LTKEYKLMV--ENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMIT----PNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTSDE 119          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 2
Query:  119 PSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388
            P    Y  G F   F V   YP + P+V+  TK++HPN+  + G +CL+IL+  W P   + +V   +  L   P  + PLN D+  +LR
Sbjct:   68 PDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLE-GNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLR 156          
The following BLAST results are available for this feature:
BLAST of FC872390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
UBC6_KLULA1.604e-1133.62Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC32_ARATH1.604e-1135.00Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UBC16_ARATH2.095e-1138.82Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC12_YARLI2.095e-1135.63NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC12_KLULA3.574e-1132.41NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UBE2W_MOUSE4.668e-1136.04Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN4.668e-1136.04Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBC6_YEAST4.668e-1131.90Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
RCE1_ARATH6.097e-1134.44NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872390 ID=FC872390; Name=FC872390; organism=Citrus clementina; type=EST; length=793bp
CGGGCGGGGGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAG
CTGACCCAGACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGG
ACTGCTCTTATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATT
CCAGCTTGCTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAG
TGCGGTTTTTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGA
GAGATATGCCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCT
TCAGTCTGTTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTG
ATAGTCCACTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATA
AGAGGATTTCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCC
AAAGAAGGGGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAG
CGTGATGTTATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATC
CAGAGATTTTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCT
ATTTTCATTGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGA
CCGTGCCAAGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATT
ATAACATTTGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTT
ATTATTTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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