FC872390

Overview
NameFC872390
Unique NameFC872390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9938 contig Ccv1_Contig9938:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.202e-24
Identity = 60/144 (41.67%), Postives = 83/144 (57.64%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE  ++QR+  A      V DD  +F W A I GP  + Y+GGVF L    P  YP +PP++ F TKI+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  D   + +S D   +   AR +T+  AM
Sbjct:    8 KELSDLQRDPPAHCSAGPVGDD--LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKS-DKEKYNRHAREWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 382
            R L +++K +Q     DP + +     ++NI +W A+I GP  TP+E G F+L     E+YP +PP VRFL+K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    7 RRLMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 382
            R L +++K +Q     DP + +     ++NI +W A+I GP  TP+E G F+L     E+YP +PP VRFL+K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    7 RRLMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 382
            R L +++K +Q     DP + +     ++NI +W A+I GP  TP+E G F+L     E+YP +PP VRFL+K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    7 RRLMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 382
            R L +++K +Q     DP + +     ++NI +W A+I GP  TP+E G F+L     E+YP +PP VRFL+K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    7 RRLMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 382
            R L +++K +Q     DP + +     ++NI +W A+I GP  TP+E G F+L     E+YP +PP VRFL+K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    7 RRLMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 55/144 (38.19%), Postives = 87/144 (60.42%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE +++QR+           DD  +F+W A I GP+ +P+ GGVF +    P  YP +PP+V F TK++HPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++  ++ ++S A+ +T+  AM
Sbjct:    8 KELRDLQRDPPVSCSAGPTGDD--MFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNIN-SNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVK-YESTAQSWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 60/146 (41.10%), Postives = 89/146 (60.96%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCD-SGNLLRSGDIRGFQSMARMYTRLAA 445
            + KE + V+ + +A   ++ V  +S+I        GP  TPYEGG F +   VP +YP +PP+++F TK++HPN+   TG ICLDILKNAWSP  TL+S   ++ AL+  PEP+ P + + + + LR  D   F   A ++TRL A
Sbjct:    7 IMKEIQAVKDDPAAHITLEFV-SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLR--DRESFNKTAALWTRLYA 149          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 2
Query:   77 DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYT 433
            + +NI++WTA+I+GP  TPYEGG+F L+   P  YP +PP+  F T I+HPN++   G IC++ILK+ W+PA  ++ V  +I+ L+  P PD PL  + G L ++   + F   AR +T
Sbjct:   32 NSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNIN-DEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQ-FDQRAREFT 148          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23
Identity = 57/144 (39.58%), Postives = 87/144 (60.42%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE  ++ R+  +      V +D  +F W A I GPS +PY GGVF LA   P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +++  P PD PL  +  ++ ++   + ++S AR +TR  A+
Sbjct:    8 KELTDLGRDPPSSCSAGPVGED--LFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNIN-SNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQ-YESTAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of FC872390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
UB2D1_BOVIN8.202e-2441.67Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBE2B_RAT1.071e-2342.19Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT1.071e-2342.19Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE1.071e-2342.19Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN1.071e-2342.19Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN1.071e-2342.19Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC30_ARATH1.071e-2338.19Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC1_YEAST1.071e-2341.10Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC31_ARATH1.399e-2342.02Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC1_MAGGR1.827e-2339.58Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872390 ID=FC872390; Name=FC872390; organism=Citrus clementina; type=EST; length=793bp
CGGGCGGGGGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAG
CTGACCCAGACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGG
ACTGCTCTTATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATT
CCAGCTTGCTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAG
TGCGGTTTTTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGA
GAGATATGCCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCT
TCAGTCTGTTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTG
ATAGTCCACTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATA
AGAGGATTTCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCC
AAAGAAGGGGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAG
CGTGATGTTATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATC
CAGAGATTTTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCT
ATTTTCATTGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGA
CCGTGCCAAGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATT
ATAACATTTGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTT
ATTATTTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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