FC872390

Overview
NameFC872390
Unique NameFC872390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    8 KELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    8 KELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    8 KELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    8 KELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23
Identity = 58/144 (40.28%), Postives = 86/144 (59.72%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE  ++ R+  A      V DD  ++ W A I GPS +PY GGVF L+   P  YP +PP+V F TKI+HPN++  +G ICLDILK+ WSPA TL  V  +I +L+    PD PL  +   + ++ D   +++ A+ +T+  A+
Sbjct:    9 KELSDLGRDPPASCSAGPVGDD--LYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNIN-SSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKT-DKAKYEATAKEWTKKYAV 148          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23
Identity = 49/124 (39.52%), Postives = 80/124 (64.52%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 382
            L +++K +Q++  A   I     D+NI  W A+I GP  TP++GG F+L+    E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N ++  +
Sbjct:    9 LMRDFKRLQQDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23
Identity = 56/144 (38.89%), Postives = 86/144 (59.72%), Query Frame = 2
Query:   17 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE  ++ R+  +      V +D  +F W A I GP  +PY GGVF LA   P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +++  P PD PL  +  ++ ++   R +++ AR +TR  A+
Sbjct:    8 KELTDLGRDPPSSCSAGPVGED--LFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNIN-SNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRAR-YEATAREWTRKYAI 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23
Identity = 49/124 (39.52%), Postives = 80/124 (64.52%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 382
            L +++K +Q++  A   I     D+NI  W A+I GP  TP++GG F+L+    E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N ++  +
Sbjct:    9 LMRDFKRLQQDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.316e-23
Identity = 51/128 (39.84%), Postives = 79/128 (61.72%), Query Frame = 2
Query:    5 RGLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 388
            R L +++K +Q +      +     D+NI  W A+I GP  TP+E G F+L     E+YP +PP VRF++K+FHPNV +  G ICLDIL+N WSP + + ++  +I +L++ P P+SP N  +  L +
Sbjct:    7 RRLMRDFKRLQEDPPTG--VSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNV-YADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYK 131          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.316e-23
Identity = 49/124 (39.52%), Postives = 79/124 (63.71%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 382
            L +++K +Q +  A   I     D+NI  W A+I GP  TP++GG F+L+    E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N ++  +
Sbjct:    9 LMRDFKRLQHDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129          
The following BLAST results are available for this feature:
BLAST of FC872390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
UB2D3_PONAB3.117e-2339.58Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE3.117e-2339.58Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA3.117e-2339.58Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN3.117e-2339.58Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UBC5_YEAST4.071e-2340.28Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC2_ARATH4.071e-2339.52Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_COLGL4.071e-2338.89Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC1_ARATH4.071e-2339.52Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBCD6_DROME5.316e-2339.84Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_MEDSA5.316e-2339.52Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872390 ID=FC872390; Name=FC872390; organism=Citrus clementina; type=EST; length=793bp
CGGGCGGGGGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAG
CTGACCCAGACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGG
ACTGCTCTTATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATT
CCAGCTTGCTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAG
TGCGGTTTTTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGA
GAGATATGCCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCT
TCAGTCTGTTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTG
ATAGTCCACTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATA
AGAGGATTTCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCC
AAAGAAGGGGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAG
CGTGATGTTATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATC
CAGAGATTTTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCT
ATTTTCATTGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGA
CCGTGCCAAGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATT
ATAACATTTGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTT
ATTATTTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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