FC872408

Overview
NameFC872408
Unique NameFC872408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig164 contig Ccv1_Contig164:1084..1612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC1_PEA (Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.169e-48
Identity = 88/107 (82.24%), Postives = 95/107 (88.79%), Query Frame = 3
Query:    6 GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            GQ++IIFLINNGGYTIEVEIHDGPYNVIKNW+YTG V AIHNG+GKCWT KV  EE+L EAI  ATG +KD LCFIEV  HKDDTSKELLEWGSRV+AANSRPPNPQ
Sbjct:  487 GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGFVSAIHNGQGKCWTAKVRTEEDLTEAIATATGAEKDSLCFIEVFAHKDDTSKELLEWGSRVAAANSRPPNPQ 593          
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC3_MAIZE (Pyruvate decarboxylase isozyme 3 (Fragment) OS=Zea mays GN=PDC3 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 4.831e-48
Identity = 90/106 (84.91%), Postives = 95/106 (89.62%), Query Frame = 3
Query:    9 QKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            Q +IIFLINNGGYTIEVEIHDGPYNVIKNWNYTG VDAIHNG GKCWT+KV  EE+L  AIE A G +KDCLCFIEV+ HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:   98 QNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGFVDAIHNGLGKCWTSKVKSEEDLTAAIETALG-EKDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 202          
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC3_SCHPO (Probable pyruvate decarboxylase C186.09 OS=Schizosaccharomyces pombe GN=SPAC186.09 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.670e-22
Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 3
Query:   18 IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAI----ENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPP 317
            I+FLINN GYTIEVEIHDGPYN IKNW+Y  +V+A + GEG     +V    EL EAI    EN+ GP       IE  + +DD SKEL+ WG  V AAN +PP
Sbjct:  471 IMFLINNRGYTIEVEIHDGPYNRIKNWDYAAIVEAFNAGEGHAKGFRVGNGHELAEAIRQAKENSQGP-----TLIECNIDQDDCSKELINWGHNVGAANGKPP 569          
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC_ZYMMO (Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.371e-18
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 3
Query:   18 IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH------NGEGKCWTTKVFCE--EELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPP 317
            IIFLINN GYTIEV IHDGPYN IKNW+Y GL++  +      +G GK    K   E  E +  A+ N  GP       IE  + ++D ++EL++WG RV+AANSR P
Sbjct:  461 IIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGP-----TLIECFIGREDCTEELVKWGKRVAAANSRKP 563          
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC_NEUCR (Pyruvate decarboxylase OS=Neurospora crassa GN=cfp PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.371e-18
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   21 IFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPP 317
            I LINN GYTIEVEIHDG YN IKNW+Y  LV+A ++ +G           EL +AI+ A    K+    IE  + +DD SKEL+ WG  V+AAN+RPP
Sbjct:  466 IMLINNRGYTIEVEIHDGSYNKIKNWDYAMLVEAFNSTDGHAKGLLANTAGELADAIKVAES-HKEGPTLIECTIDQDDCSKELITWGHYVAAANARPP 563          
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC2_SCHPO (Probable pyruvate decarboxylase C1F8.07c OS=Schizosaccharomyces pombe GN=SPAC1F8.07c PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.887e-18
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:   18 IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPP 317
            +IFL+NN GYTIE++IHDGPYN I+NW++    ++++   GK         EEL  AI+ A    K+    IE  +  DD ++EL++WG  V++AN+RPP
Sbjct:  467 LIFLLNNRGYTIEIQIHDGPYNRIQNWDFAAFCESLNGETGKAKGLHAKTGEELTSAIKVAL-QNKEGPTLIECAIDTDDCTQELVDWGKAVASANARPP 565          
The following BLAST results are available for this feature:
BLAST of FC872408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PDC1_PEA2.169e-4882.24Pyruvate decarboxylase isozyme 1 OS=Pisum sativum ... [more]
PDC3_MAIZE4.831e-4884.91Pyruvate decarboxylase isozyme 3 (Fragment) OS=Zea... [more]
PDC3_SCHPO2.670e-2253.85Probable pyruvate decarboxylase C186.09 OS=Schizos... [more]
PDC_ZYMMO1.371e-1848.15Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc... [more]
PDC_NEUCR1.371e-1850.51Pyruvate decarboxylase OS=Neurospora crassa GN=cfp... [more]
PDC2_SCHPO8.887e-1843.00Probable pyruvate decarboxylase C1F8.07c OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BD11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872408 ID=FC872408; Name=FC872408; organism=Citrus clementina; type=EST; length=529bp
GGGGTGGGCAGAAGACTATAATCTTCCTGATTAACAATGGTGGTTACACC
ATTGAAGTTGAGATCCATGATGGACCGTACAATGTGATCAAGAACTGGAA
CTACACCGGGTTGGTTGATGCAATCCACAATGGCGAAGGCAAGTGCTGGA
CAACCAAGGTCTTCTGCGAGGAGGAGCTCATCGAAGCCATTGAGAACGCT
ACTGGACCCAAGAAGGATTGCTTGTGCTTCATTGAAGTACTTGTTCACAA
GGATGATACAAGCAAAGAGCTTTTGGAATGGGGCTCCAGGGTCTCCGCTG
CCAATAGCCGCCCACCAAATCCTCAGTAGATATGAGGCGGCTCATATTGC
AAATTGCACTCTACTACCATTTATAGCCAAATTAAATGCGCGCATGTCTT
TTCTGTGGTTACTTTACTAAGTTTTGGGTATTTTGAACTATTTGCTGGTT
TCTAATGTAAATTCATTTTAAAATTTAATATCTACTAAATCCTCTCCATT
GCGTAAAAAAAAAAAAAAAAAAAAAAAAA
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