FC872411

Overview
NameFC872411
Unique NameFC872411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS2_RAT (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.264e-70
Identity = 125/202 (61.88%), Postives = 152/202 (75.25%), Query Frame = 1
Query:  223 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828
            T  K+VGILA+++YFP   V Q  LE  +    GKYT+GLGQ  M FCS  ED+ S+ LT V  L+E+ K+    +GRLEVG+ET+IDKSK++KT LM++F+  GNTDIEG+D+TNACYGGTA+LFN  NW+ESS WDGRY LVVC D AVY  G  RPTGGA AV ML+GP AP+  E  LRG+HM +AYDFYKPNLASEY
Sbjct:   49 TWPKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNPRPTGGAGAVAMLIGPKAPLVLEQGLRGTHMENAYDFYKPNLASEY 250          
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS2_PIG (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Sus scrofa GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.395e-69
Identity = 124/202 (61.39%), Postives = 153/202 (75.74%), Query Frame = 1
Query:  223 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828
            T  K+VGILA+++YFP   V Q  LE  D    G+YT+GLGQ  M FCS  ED+ S+ LT V  L+E+ ++    +G LEVG+ET+IDKSKS+KT LM++F+  GNTDIEG+D+TNACYGGTA+LFN  NWVESS+WDGRY +VVC D AVY  G +RPTGGA AV MLVGP+AP+A E  LRG+HM +AYDFYKPN  SEY
Sbjct:   49 TWPKDVGILALEVYFPAQYVDQTDLEKFDNVEAGRYTVGLGQTHMGFCSVQEDINSLCLTVVQRLMERTQLPWDSVGWLEVGTETIIDKSKSVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWVESSAWDGRYAVVVCGDIAVYPRGNSRPTGGAGAVAMLVGPEAPLALERGLRGTHMENAYDFYKPNATSEY 250          
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS2_BOVIN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Bos taurus GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.380e-69
Identity = 124/202 (61.39%), Postives = 153/202 (75.74%), Query Frame = 1
Query:  223 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828
            T  K+VGILAM++YFP   V Q  LE  +    G+YT+GLGQ  M FCS  EDV S+ LT V  L+E+ ++    +GRLEVG+ET+IDKSK++KT LM++F+  GNTDIEG+D+TNACYGGTA+LFN  NW+ESSSWDGRY LVVC D AVY  G ARPTGGA AV MLVGP+AP+  E  LRG+HM + YDFYKP++ SEY
Sbjct:   49 TWPKDVGILAMEVYFPAQYVDQTELEKFNKVEAGRYTVGLGQTQMGFCSVQEDVNSLCLTVVQQLMERTQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLVGPEAPLVLERGLRGTHMENVYDFYKPDVTSEY 250          
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS_YEAST (Hydroxymethylglutaryl-CoA synthase OS=Saccharomyces cerevisiae GN=ERG13 PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.910e-67
Identity = 121/203 (59.61%), Postives = 155/203 (76.35%), Query Frame = 1
Query:  220 KTMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828
            KT  +NVGI  + IY P  CV Q  LE  DG S+GKYTIGLGQ  M+F ++ ED+ SMSLT ++ L++ Y ID  +IGRLEVG+ET+IDKSKS+K+ LMQ+F +  NTD+EG+D+ NACYGGT ALFN +NW+ES++WDGR  +VVC D A+Y +G ARPTGGA  V M +GPDAP+ F+S +R S+M HAYDFYKP+  SEY
Sbjct:   43 KTRPQNVGIKGIQIYIPTQCVNQSELEKFDGVSQGKYTIGLGQTNMSFVNDREDIYSMSLTVLSKLIKSYNIDTNKIGRLEVGTETLIDKSKSVKSVLMQLFGE--NTDVEGIDTLNACYGGTNALFNSLNWIESNAWDGRDAIVVCGDIAIYDKGAARPTGGAGTVAMWIGPDAPIVFDS-VRASYMEHAYDFYKPDFTSEY 242          
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCSB_DICDI (Hydroxymethylglutaryl-CoA synthase B OS=Dictyostelium discoideum GN=hgsB PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.800e-67
Identity = 117/199 (58.79%), Postives = 155/199 (77.89%), Query Frame = 1
Query:  232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828
            K++GI A+DIYFP T V Q  L+ +D  S GKYTIGLGQ  M+F  + ED++SM++T+V  ++ KY ID + IGRLEVG+ET+IDKSKS+K+ +M +F+++GNT +EGVD+ NACYGGT ALFN + W+ESS WDGRY LVV  D AVY++G ARPTGGA  V ML+GP+A + F+  LRG+HM +  DFYKP+L+SEY
Sbjct:    5 KDIGICAIDIYFPQTYVNQSELKKYDKVSNGKYTIGLGQTNMSFVGDREDIVSMAMTSVKMMMSKYSIDYQSIGRLEVGTETIIDKSKSVKSSIMSLFQEYGNTSLEGVDTLNACYGGTNALFNSLQWIESSYWDGRYALVVTGDIAVYSKGAARPTGGAGVVTMLIGPNATLIFDQSLRGTHMENVNDFYKPDLSSEY 203          
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS1_BLAGE (Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.800e-67
Identity = 123/198 (62.12%), Postives = 155/198 (78.28%), Query Frame = 1
Query:  235 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828
            +VGI+A+++ FP   V Q  LE +D  S GKYT+GLGQ  M FC++ ED+ S+ LT V+ L+E++ I   QIGRLEVG+ET++DKSKS+KT LMQ+F+   NTDIEGVD+ NACYGGT+ALFN ++WVESSSWDGRY LVV  D AVYA+G ARPTGGA AV MLVG +AP+ F+  +R SHM HAYDFYKP+L+S Y
Sbjct:    5 DVGIVALELIFPSQYVDQVDLEVYDNVSAGKYTVGLGQARMGFCTDREDINSLCLTVVSRLMERWSIPYSQIGRLEVGTETLLDKSKSVKTVLMQLFKD--NTDIEGVDTVNACYGGTSALFNAISWVESSSWDGRYALVVAGDIAVYAKGSARPTGGAGAVAMLVGANAPLVFDRGVRSSHMQHAYDFYKPDLSSLY 200          
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS_SCHPO (Hydroxymethylglutaryl-CoA synthase OS=Schizosaccharomyces pombe GN=hcs1 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.067e-65
Identity = 118/199 (59.30%), Postives = 153/199 (76.88%), Query Frame = 1
Query:  232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828
            K++GI  + +Y P   V+Q ALEAHDG S GKYTIGLG   MAF  + ED+ S  LTA++ L+++Y+ID  +IGRLEVG+ET+IDKSKS+K+ LMQ+F    N ++EG+D  NACYGG  ALFN ++W+ESS+WDGR G+VV  D A+YA+G ARPTGGA  V +LVGP+AP+ FE  LRG++M HAYDFYKP+L SEY
Sbjct:    6 KDIGIKGLVLYTPNQYVEQAALEAHDGVSTGKYTIGLGLTKMAFVDDREDIYSFGLTALSQLIKRYQIDISKIGRLEVGTETIIDKSKSVKSVLMQLFGD--NHNVEGIDCVNACYGGVNALFNTIDWIESSAWDGRDGIVVAGDIALYAKGNARPTGGAGCVALLVGPNAPIVFEPGLRGTYMQHAYDFYKPDLTSEY 202          
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS2_BLAGE (Hydroxymethylglutaryl-CoA synthase 2 OS=Blattella germanica GN=HMGCS-2 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.807e-62
Identity = 112/199 (56.28%), Postives = 149/199 (74.87%), Query Frame = 1
Query:  232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828
            ++VGI+ +++ FP   V Q  LE +D  S GKYT+GLGQ+ M  C++ ED+ S+ LTAV  L+E+  ID   IG LEVG+ET++DK KS+KT LMQ+FE+ GNTD+EG+D+ NACY GTAALFN + W+ESSSWDGRY +VV  D A+YA+    PTGGA A++ML+G +AP+  +  +R SHM HAYDFYKP+L SEY
Sbjct:    6 EDVGIIGIEMIFPSLYVDQAELETYDEVSPGKYTMGLGQDKMGVCTDREDINSLCLTAVDKLMERNNIDYNDIGWLEVGTETILDKVKSVKTVLMQLFEESGNTDVEGIDTINACYRGTAALFNALIWIESSSWDGRYAIVVAADIAIYAK-ECSPTGGAGALLMLIGANAPIVIDRGVRASHMKHAYDFYKPDLMSEY 203          
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS_CAEEL (Hydroxymethylglutaryl-CoA synthase OS=Caenorhabditis elegans GN=F25B4.6 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.667e-49
Identity = 101/205 (49.27%), Postives = 134/205 (65.37%), Query Frame = 1
Query:  223 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVE-SSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKP--NLASEY 828
            T   +VGI A+++YFP   V Q  LE  +  S GKYTIGLGQ+ M FCS+ ED++S+SLT    L+E YKI    IG L VG+ET+IDKSKS+KT LM +F   GN+DIEGVD  NAC+GG  AL + ++WV  +   D +  +VV  D A+Y EGPAR TGGA A+  L+ PDA +  + +    HM + +DF+KP   + SEY
Sbjct:    9 TPVTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYTIGLGQQQMGFCSDNEDIVSISLTVTRKLIETYKISTDSIGCLVVGTETMIDKSKSVKTALMDLFP--GNSDIEGVDIKNACFGGAQALLHAIDWVTVNHPLDKKNAIVVVADIAIYEEGPARCTGGAGAIAFLICPDASIPIDRQFSACHMKNTWDFFKPITPIPSEY 211          
The following BLAST results are available for this feature:
BLAST of FC872411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HMCS2_RAT6.264e-7061.88Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_PIG1.395e-6961.39Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_BOVIN2.380e-6961.39Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS_YEAST2.910e-6759.61Hydroxymethylglutaryl-CoA synthase OS=Saccharomyce... [more]
HMCSB_DICDI3.800e-6758.79Hydroxymethylglutaryl-CoA synthase B OS=Dictyostel... [more]
HMCS1_BLAGE3.800e-6762.12Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella ... [more]
HMCS_SCHPO6.067e-6559.30Hydroxymethylglutaryl-CoA synthase OS=Schizosaccha... [more]
HMCS2_BLAGE4.807e-6256.28Hydroxymethylglutaryl-CoA synthase 2 OS=Blattella ... [more]
HMCS_CAEEL4.667e-4949.27Hydroxymethylglutaryl-CoA synthase OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AA03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872411 ID=FC872411; Name=FC872411; organism=Citrus clementina; type=EST; length=830bp
GGGGATCGCCAATTTTCTCTCCGAATATTGAGGCCTGTCTTTCTTTCTGT
CTCTGAACGGCTAGCTGGGCTACGTTTTACAAACTCAAGCCAACAGCAGA
GCAAGAAAGAAAGCAAAGCAACGCAAAACACATTTTCGTTGTTGTGCTGT
TTTCTTGATACATATATATATTTACATATATTTTTCATCTGGGCATTTTC
TGTTTTTGAAAACCAGATAAAAACAATGGCAAAGAATGTTGGAATCCTCG
CTATGGACATCTACTTCCCTCCTACTTGCGTCCAGCAGGAAGCTTTGGAG
GCTCATGATGGTGCAAGCAAAGGAAAATATACAATCGGGCTTGGACAGGA
GTGCATGGCATTTTGTTCAGAGGTGGAAGATGTCATCTCAATGAGCTTGA
CAGCTGTTACTAACCTCCTAGAGAAGTATAAGATTGATCCAAAACAAATT
GGTCGTCTCGAAGTAGGAAGCGAAACTGTGATAGACAAGAGCAAATCCAT
TAAGACTTTTTTGATGCAAATTTTTGAGAAATTTGGAAATACTGACATTG
AAGGTGTTGACTCGACCAATGCCTGCTACGGAGGAACTGCTGCATTATTT
AACTGTGTGAACTGGGTGGAGAGTAGTTCATGGGACGGGCGCTATGGGCT
CGTTGTGTGTACCGACAGTGCGGTTTATGCAGAAGGACCAGCAAGACCCA
CTGGAGGAGCAGCTGCTGTTGTCATGTTAGTAGGGCCTGATGCCCCTGTT
GCTTTTGAAAGCAAATTAAGGGGGAGTCATATGTCTCATGCCTATGATTT
CTACAAGCCAAACCTTGCTAGTGAATATCC
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