FC872411
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS2_RAT (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 6.264e-70 Identity = 125/202 (61.88%), Postives = 152/202 (75.25%), Query Frame = 1 Query: 223 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 T K+VGILA+++YFP V Q LE + GKYT+GLGQ M FCS ED+ S+ LT V L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGGTA+LFN NW+ESS WDGRY LVVC D AVY G RPTGGA AV ML+GP AP+ E LRG+HM +AYDFYKPNLASEY Sbjct: 49 TWPKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNPRPTGGAGAVAMLIGPKAPLVLEQGLRGTHMENAYDFYKPNLASEY 250
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS2_PIG (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Sus scrofa GN=HMGCS2 PE=2 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 1.395e-69 Identity = 124/202 (61.39%), Postives = 153/202 (75.74%), Query Frame = 1 Query: 223 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 T K+VGILA+++YFP V Q LE D G+YT+GLGQ M FCS ED+ S+ LT V L+E+ ++ +G LEVG+ET+IDKSKS+KT LM++F+ GNTDIEG+D+TNACYGGTA+LFN NWVESS+WDGRY +VVC D AVY G +RPTGGA AV MLVGP+AP+A E LRG+HM +AYDFYKPN SEY Sbjct: 49 TWPKDVGILALEVYFPAQYVDQTDLEKFDNVEAGRYTVGLGQTHMGFCSVQEDINSLCLTVVQRLMERTQLPWDSVGWLEVGTETIIDKSKSVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWVESSAWDGRYAVVVCGDIAVYPRGNSRPTGGAGAVAMLVGPEAPLALERGLRGTHMENAYDFYKPNATSEY 250
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS2_BOVIN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Bos taurus GN=HMGCS2 PE=2 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 2.380e-69 Identity = 124/202 (61.39%), Postives = 153/202 (75.74%), Query Frame = 1 Query: 223 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 T K+VGILAM++YFP V Q LE + G+YT+GLGQ M FCS EDV S+ LT V L+E+ ++ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGGTA+LFN NW+ESSSWDGRY LVVC D AVY G ARPTGGA AV MLVGP+AP+ E LRG+HM + YDFYKP++ SEY Sbjct: 49 TWPKDVGILAMEVYFPAQYVDQTELEKFNKVEAGRYTVGLGQTQMGFCSVQEDVNSLCLTVVQQLMERTQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLVGPEAPLVLERGLRGTHMENVYDFYKPDVTSEY 250
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS_YEAST (Hydroxymethylglutaryl-CoA synthase OS=Saccharomyces cerevisiae GN=ERG13 PE=1 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 2.910e-67 Identity = 121/203 (59.61%), Postives = 155/203 (76.35%), Query Frame = 1 Query: 220 KTMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 KT +NVGI + IY P CV Q LE DG S+GKYTIGLGQ M+F ++ ED+ SMSLT ++ L++ Y ID +IGRLEVG+ET+IDKSKS+K+ LMQ+F + NTD+EG+D+ NACYGGT ALFN +NW+ES++WDGR +VVC D A+Y +G ARPTGGA V M +GPDAP+ F+S +R S+M HAYDFYKP+ SEY Sbjct: 43 KTRPQNVGIKGIQIYIPTQCVNQSELEKFDGVSQGKYTIGLGQTNMSFVNDREDIYSMSLTVLSKLIKSYNIDTNKIGRLEVGTETLIDKSKSVKSVLMQLFGE--NTDVEGIDTLNACYGGTNALFNSLNWIESNAWDGRDAIVVCGDIAIYDKGAARPTGGAGTVAMWIGPDAPIVFDS-VRASYMEHAYDFYKPDFTSEY 242
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCSB_DICDI (Hydroxymethylglutaryl-CoA synthase B OS=Dictyostelium discoideum GN=hgsB PE=3 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 3.800e-67 Identity = 117/199 (58.79%), Postives = 155/199 (77.89%), Query Frame = 1 Query: 232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 K++GI A+DIYFP T V Q L+ +D S GKYTIGLGQ M+F + ED++SM++T+V ++ KY ID + IGRLEVG+ET+IDKSKS+K+ +M +F+++GNT +EGVD+ NACYGGT ALFN + W+ESS WDGRY LVV D AVY++G ARPTGGA V ML+GP+A + F+ LRG+HM + DFYKP+L+SEY Sbjct: 5 KDIGICAIDIYFPQTYVNQSELKKYDKVSNGKYTIGLGQTNMSFVGDREDIVSMAMTSVKMMMSKYSIDYQSIGRLEVGTETIIDKSKSVKSSIMSLFQEYGNTSLEGVDTLNACYGGTNALFNSLQWIESSYWDGRYALVVTGDIAVYSKGAARPTGGAGVVTMLIGPNATLIFDQSLRGTHMENVNDFYKPDLSSEY 203
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS1_BLAGE (Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 3.800e-67 Identity = 123/198 (62.12%), Postives = 155/198 (78.28%), Query Frame = 1 Query: 235 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 +VGI+A+++ FP V Q LE +D S GKYT+GLGQ M FC++ ED+ S+ LT V+ L+E++ I QIGRLEVG+ET++DKSKS+KT LMQ+F+ NTDIEGVD+ NACYGGT+ALFN ++WVESSSWDGRY LVV D AVYA+G ARPTGGA AV MLVG +AP+ F+ +R SHM HAYDFYKP+L+S Y Sbjct: 5 DVGIVALELIFPSQYVDQVDLEVYDNVSAGKYTVGLGQARMGFCTDREDINSLCLTVVSRLMERWSIPYSQIGRLEVGTETLLDKSKSVKTVLMQLFKD--NTDIEGVDTVNACYGGTSALFNAISWVESSSWDGRYALVVAGDIAVYAKGSARPTGGAGAVAMLVGANAPLVFDRGVRSSHMQHAYDFYKPDLSSLY 200
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS_SCHPO (Hydroxymethylglutaryl-CoA synthase OS=Schizosaccharomyces pombe GN=hcs1 PE=1 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 6.067e-65 Identity = 118/199 (59.30%), Postives = 153/199 (76.88%), Query Frame = 1 Query: 232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 K++GI + +Y P V+Q ALEAHDG S GKYTIGLG MAF + ED+ S LTA++ L+++Y+ID +IGRLEVG+ET+IDKSKS+K+ LMQ+F N ++EG+D NACYGG ALFN ++W+ESS+WDGR G+VV D A+YA+G ARPTGGA V +LVGP+AP+ FE LRG++M HAYDFYKP+L SEY Sbjct: 6 KDIGIKGLVLYTPNQYVEQAALEAHDGVSTGKYTIGLGLTKMAFVDDREDIYSFGLTALSQLIKRYQIDISKIGRLEVGTETIIDKSKSVKSVLMQLFGD--NHNVEGIDCVNACYGGVNALFNTIDWIESSAWDGRDGIVVAGDIALYAKGNARPTGGAGCVALLVGPNAPIVFEPGLRGTYMQHAYDFYKPDLTSEY 202
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS2_BLAGE (Hydroxymethylglutaryl-CoA synthase 2 OS=Blattella germanica GN=HMGCS-2 PE=2 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 4.807e-62 Identity = 112/199 (56.28%), Postives = 149/199 (74.87%), Query Frame = 1 Query: 232 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEY 828 ++VGI+ +++ FP V Q LE +D S GKYT+GLGQ+ M C++ ED+ S+ LTAV L+E+ ID IG LEVG+ET++DK KS+KT LMQ+FE+ GNTD+EG+D+ NACY GTAALFN + W+ESSSWDGRY +VV D A+YA+ PTGGA A++ML+G +AP+ + +R SHM HAYDFYKP+L SEY Sbjct: 6 EDVGIIGIEMIFPSLYVDQAELETYDEVSPGKYTMGLGQDKMGVCTDREDINSLCLTAVDKLMERNNIDYNDIGWLEVGTETILDKVKSVKTVLMQLFEESGNTDVEGIDTINACYRGTAALFNALIWIESSSWDGRYAIVVAADIAIYAK-ECSPTGGAGALLMLIGANAPIVIDRGVRASHMKHAYDFYKPDLMSEY 203
BLAST of FC872411 vs. ExPASy Swiss-Prot
Match: HMCS_CAEEL (Hydroxymethylglutaryl-CoA synthase OS=Caenorhabditis elegans GN=F25B4.6 PE=2 SV=2) HSP 1 Score: 194.897 bits (494), Expect = 4.667e-49 Identity = 101/205 (49.27%), Postives = 134/205 (65.37%), Query Frame = 1 Query: 223 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVE-SSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKP--NLASEY 828 T +VGI A+++YFP V Q LE + S GKYTIGLGQ+ M FCS+ ED++S+SLT L+E YKI IG L VG+ET+IDKSKS+KT LM +F GN+DIEGVD NAC+GG AL + ++WV + D + +VV D A+Y EGPAR TGGA A+ L+ PDA + + + HM + +DF+KP + SEY Sbjct: 9 TPVTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYTIGLGQQQMGFCSDNEDIVSISLTVTRKLIETYKISTDSIGCLVVGTETMIDKSKSVKTALMDLFP--GNSDIEGVDIKNACFGGAQALLHAIDWVTVNHPLDKKNAIVVVADIAIYEEGPARCTGGAGAIAFLICPDASIPIDRQFSACHMKNTWDFFKPITPIPSEY 211 The following BLAST results are available for this feature:
BLAST of FC872411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872411 ID=FC872411; Name=FC872411; organism=Citrus clementina; type=EST; length=830bpback to top |