FC872422

Overview
NameFC872422
Unique NameFC872422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872422_ssr779 microsatellite FC872422_ssr779:779..790. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433S_HUMAN (14-3-3 protein sigma OS=Homo sapiens GN=SFN PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.848e-50
Identity = 100/173 (57.80%), Postives = 126/173 (72.83%), Query Frame = 2
Query:   11 GNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD-IPEDGGDEAQK 526
            G+E     ++EYR+KVE EL  +   ++ ++D HLI      ES VFY KMKGDYYRYLA   TGD++K + D +  AYQ A   ++ E+ PT+PIRLGLALNFSVF+YEI NSPE A  LAK  FDEA+++L TLSE+SYKDSTLIMQLLRDNLTLWT+D   E+GG+  Q+
Sbjct:   73 GSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGGEAPQE 245          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433S_SHEEP (14-3-3 protein sigma OS=Ovis aries GN=SFN PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.668e-49
Identity = 97/162 (59.88%), Postives = 120/162 (74.07%), Query Frame = 2
Query:   35 IKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEA 520
            ++EYR+KVE EL  +   ++ ++D HLI      ES VFY KMKGDYYRYLA   TGD++K + D +  AYQ A   ++ E+ PT+PIRLGLALNFSVF+YEI NSPE A  LAK  FDEA+++L TLSE+SYKDSTLIMQLLRDNLTLWT+D   + G EA
Sbjct:   81 VQEYREKVETELRGVCDTVLGLLDTHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGGEA 242          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433S_BOVIN (14-3-3 protein sigma OS=Bos taurus GN=SFN PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.668e-49
Identity = 97/162 (59.88%), Postives = 120/162 (74.07%), Query Frame = 2
Query:   35 IKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEA 520
            ++EYR+KVE EL  +   ++ ++D HLI      ES VFY KMKGDYYRYLA   TGD++K + D +  AYQ A   ++ E+ PT+PIRLGLALNFSVF+YEI NSPE A  LAK  FDEA+++L TLSE+SYKDSTLIMQLLRDNLTLWT+D   + G EA
Sbjct:   81 VQEYREKVETELRGVCDTVLGLLDTHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGGEA 242          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14332_ECHGR (14-3-3 protein homolog 2 OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.571e-48
Identity = 92/154 (59.74%), Postives = 119/154 (77.27%), Query Frame = 2
Query:   44 YRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPED 505
            Y +KVE EL+KI  D++ ++ ++LI    G E+ +FYYKM GDYYRYLA  + G++     + + +AYQ A++ AEAELS THPIRLGLALNFSVFYYEI N PE+AC LAK AFD AI+E+D++ +E+YKDSTLIMQLLRDNLTLW+S+   D
Sbjct:   94 YLKKVEEELTKICNDVLALLSKNLITEKIGAEAKIFYYKMMGDYYRYLAEVQEGEQNDKSTEAAEEAYQKATSLAEAELSVTHPIRLGLALNFSVFYYEIKNMPEKACSLAKAAFDAAITEVDSIKDETYKDSTLIMQLLRDNLTLWSSECETD 247          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14332_ECHMU (14-3-3 protein homolog 2 OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.583e-48
Identity = 92/154 (59.74%), Postives = 118/154 (76.62%), Query Frame = 2
Query:   44 YRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPED 505
            Y +KVE EL+KI  D++ ++ ++LI    G E+ +FYYKM GDYYRYLA  + G++     + + +AYQ A++ AEAELS THPIRLGLALNFSVFYYEI N PE+AC LAK AFD AI+E+D++ +E+YKDSTLIMQLLRDNLTLW S+   D
Sbjct:   94 YLKKVEEELTKICNDVLALLSKNLITEKIGAEAKIFYYKMMGDYYRYLAEVQEGEQNDKSTEAAEEAYQKATSLAEAELSVTHPIRLGLALNFSVFYYEIKNMPEKACSLAKAAFDAAITEVDSIKDETYKDSTLIMQLLRDNLTLWNSECETD 247          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14331_SCHMA (14-3-3 protein homolog 1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.800e-45
Identity = 94/169 (55.62%), Postives = 121/169 (71.60%), Query Frame = 2
Query:   14 NELSVKRI-KEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 517
            N+ + K+I +EYR K+E EL+ I   ++ +++++L+P+ +  +S VF+ KM+GDYYRYLA   T D R  V   S+ AY  A+T AE  L  THPIRLGLALNFSVF+YEI N   +AC LAK AFD AI+ELD L ++SYKDSTLIMQLLRDNLTLW SD   +G  E
Sbjct:   82 NDRTKKQIAEEYRIKMEKELNTICNQVLALLEDYLLPNASPDDSKVFFLKMQGDYYRYLAEVATDDARTEVVQKSLDAYTKATTAAE-NLPTTHPIRLGLALNFSVFFYEIQNDAAKACELAKSAFDSAIAELDQLQDDSYKDSTLIMQLLRDNLTLWASDQTAEGDVE 249          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14331_ECHMU (14-3-3 protein homolog 1 OS=Echinococcus multilocularis PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.418e-42
Identity = 89/154 (57.79%), Postives = 111/154 (72.08%), Query Frame = 2
Query:   44 YRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPED 505
            Y +KVE EL  I  D++  +    I    G E+ +FYYKM GDYYRYLA  + G++     + + +A Q A++ AEAELS THPIRLGLALNFSVFYYEI N PE+AC LAK AFD AI+E+D++ +E+YKDSTLIMQLLRDNLTLW S+   D
Sbjct:   91 YLKKVEEELIPICNDVL-ALPVLPITEKIGAEAKIFYYKMMGDYYRYLAEVQEGEQNDKSTEAAEEANQKATSLAEAELSVTHPIRLGLALNFSVFYYEIKNMPEKACSLAKAAFDAAITEVDSIKDETYKDSTLIMQLLRDNLTLWNSECETD 243          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14331_ECHGR (14-3-3 protein homolog 1 OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.126e-42
Identity = 88/154 (57.14%), Postives = 111/154 (72.08%), Query Frame = 2
Query:   44 YRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPED 505
            Y +KVE EL +I  D++  +    I    G E+ +FYYKM GDYYRY A  + G++     + + +A Q A++ AEAELS THPIRLGLALNFSVFYYEI N PE+AC LAK AFD AI+E+D++ +E+YKDSTLIMQLLRDNLTLW S+   D
Sbjct:   91 YLKKVEEELIQICNDVL-ALPVLPITEKIGAEAKIFYYKMMGDYYRYSAEVQEGEQNDKSTEAAEEANQKATSLAEAELSVTHPIRLGLALNFSVFYYEIKNMPEKACSLAKAAFDAAITEVDSIKDETYKDSTLIMQLLRDNLTLWNSECETD 243          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433_ENCCU (14-3-3 protein homolog OS=Encephalitozoon cuniculi GN=ECU03_1010 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.060e-37
Identity = 87/169 (51.48%), Postives = 116/169 (68.64%), Query Frame = 2
Query:   35 IKEYRQKVEAELSKISTDIMQVIDEHLIP---SCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG---GDEAQ 523
            I E  + VE EL +   +++ +I  +++    +    E  +F+ KMKGDYYRY A   TG E   V+  + ++Y+ A+  A+  L PT+PI+LGLALN+SVF+YEI+N  E+AC +AK AFDEAI ELDTLSEE Y+DSTLIMQLLRDNLTLWTS   E+G   GDE +
Sbjct:   87 INEKIKVVEEELLRFCDEVLDIITTYILSLEEAQKNIEYNIFFLKMKGDYYRYKAEVVTGPEHSEVSKHAAESYKEATEKAKT-LPPTNPIKLGLALNYSVFHYEILNDSEKACSIAKGAFDEAIKELDTLSEEHYRDSTLIMQLLRDNLTLWTS--REEGNVMGDEGK 252          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433G_SHEEP (14-3-3 protein gamma (Fragments) OS=Ovis aries GN=YWHAG PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.193e-35
Identity = 77/125 (61.60%), Postives = 90/125 (72.00%), Query Frame = 2
Query:  137 ESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGG 511
            + T FY KMKGDYYRYLA   TG++R  V + S KAY  A   ++  + PTHPIRLGLALN+SVFYYEI             AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD  +D G
Sbjct:   45 QKTSFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEI------------TAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 157          
The following BLAST results are available for this feature:
BLAST of FC872422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433S_HUMAN1.848e-5057.8014-3-3 protein sigma OS=Homo sapiens GN=SFN PE=1 S... [more]
1433S_SHEEP2.668e-4959.8814-3-3 protein sigma OS=Ovis aries GN=SFN PE=2 SV=... [more]
1433S_BOVIN2.668e-4959.8814-3-3 protein sigma OS=Bos taurus GN=SFN PE=2 SV=... [more]
14332_ECHGR6.571e-4859.7414-3-3 protein homolog 2 OS=Echinococcus granulosu... [more]
14332_ECHMU8.583e-4859.7414-3-3 protein homolog 2 OS=Echinococcus multilocu... [more]
14331_SCHMA6.800e-4555.6214-3-3 protein homolog 1 OS=Schistosoma mansoni PE... [more]
14331_ECHMU1.418e-4257.7914-3-3 protein homolog 1 OS=Echinococcus multilocu... [more]
14331_ECHGR4.126e-4257.1414-3-3 protein homolog 1 OS=Echinococcus granulosu... [more]
1433_ENCCU3.060e-3751.4814-3-3 protein homolog OS=Encephalitozoon cuniculi... [more]
1433G_SHEEP2.193e-3561.6014-3-3 protein gamma (Fragments) OS=Ovis aries GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BE04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872422 ID=FC872422; Name=FC872422; organism=Citrus clementina; type=EST; length=819bp
GGGGGCCAGAGGGAATGAACTTAGTGTGAAAAGAATTAAAGAGTATAGGC
AAAAGGTAGAAGCTGAGCTGTCCAAGATCAGCACTGATATTATGCAAGTC
ATTGATGAGCATTTGATCCCTTCCTGCACCGGAGGTGAATCCACTGTGTT
TTACTATAAAATGAAAGGTGATTATTATCGGTACTTGGCATAGTTTAAGA
CTGGTGATGAAAGGAAAAATGTTGCTGATCTGTCAATGAAAGCCTATCAG
GCAGCTTCTACTACCGCAGAAGCTGAATTGTCTCCTACCCACCCCATCCG
ACTTGGTTTGGCCTTGAACTTCTCAGTTTTTTACTATGAGATTATGAACT
CTCCTGAAAGGGCATGCCACCTTGCAAAGCAGGCCTTTGATGAAGCCATC
TCAGAATTGGATACATTAAGTGAGGAATCTTACAAAGACAGCACGTTGAT
AATGCAGCTATTGAGGGACAACCTCACTCTTTGGACTTCTGACATACCAG
AGGATGGAGGTGATGAAGCCCAGAAAATGGACATCTCTGCTAAAGATGGT
GAAGGCGAAGATTGAAGAAGCAGAGTGAACCAGCCAGGAGCTTGGGAGCT
CTAGCATATGATAGCAAGGAAGCTGCAATACCTTTATGACTCCCGGTGTT
TTTCTTAGTTTACAAGAGACACTCAAGTACTGTTATTGTGCTGTTCCTAT
AATGTGGGTGTTATCTTCACTGTCAAGAGTTTCATGATTGGACTGCTTGT
ATCATTTGCATCCCAGAATCTTTTATATCTGCTGCTGCTGATCAAAAAAA
AAAAAAAAAAAAAAAAAAA
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