FC872422

Overview
NameFC872422
Unique NameFC872422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872422_ssr779 microsatellite FC872422_ssr779:779..790. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14331_MAIZE (14-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.916e-65
Identity = 125/173 (72.25%), Postives = 144/173 (83.24%), Query Frame = 2
Query:    8 RGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 526
            RGNE  V  IK+YR K+E EL+KI   I+++++ HL+PS T  ES VFY KMKGDYYRYLA FKTG ERK+ A+ +M AY+AA   A AEL+PTHPIRLGLALNFSVFYYEI+NSP+RAC LAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDI ED  +E ++
Sbjct:   79 RGNEDRVTLIKDYRGKIETELTKICDGILKLLETHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDPAEEIRE 251          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14332_MAIZE (14-3-3-like protein GF14-12 OS=Zea mays GN=GRF2 PE=2 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 7.727e-65
Identity = 128/180 (71.11%), Postives = 146/180 (81.11%), Query Frame = 2
Query:    8 RGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGD---EAQKMDIS 538
            RGNE  V  IK+YR K+E EL+KI   I+++++ HL+PS T  ES VFY KMKGDYYRYLA FKTG ERK+ A+ +M AY+AA   A AEL+PTHPIRLGLALNFSVFYYEI+NSP+RAC LAKQAFDEAISELDTLSEESYKDSTLIMQLL DNLTLWTSDI ED  +   EA K D+S
Sbjct:   79 RGNEDRVTLIKDYRGKIETELTKICDGILKLLESHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAISELDTLSEESYKDSTLIMQLLHDNLTLWTSDISEDPAEEIREAPKHDLS 258          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433_CHLRE (14-3-3-like protein OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.009e-64
Identity = 123/184 (66.85%), Postives = 149/184 (80.98%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPED-GGDEAQKMDISAKDGE 553
            A+GNE  V+RI++YR  VE ELSKI   I+Q++D+HLIP+ + GES VFY KMKGDY+RYLA FKTG +RK  A+ ++ AY+AA   A  +L PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAI+ELD+L EESYKDSTLIMQLLRDNLTLWTSD+ +   GD+ +  D+  +D E
Sbjct:   75 AKGNEEHVQRIRKYRTVVEEELSKICASILQLLDDHLIPTASTGESKVFYLKMKGDYHRYLAEFKTGADRKEAAEHTLLAYKAAQDIALVDLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLGEESYKDSTLIMQLLRDNLTLWTSDMQDPAAGDDREGADMKVEDAE 258          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: BMH2_YEAST (Protein BMH2 OS=Saccharomyces cerevisiae GN=BMH2 PE=1 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.318e-64
Identity = 120/171 (70.18%), Postives = 141/171 (82.46%), Query Frame = 2
Query:   14 NELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 526
            +E  V+ I+ YR K+E EL+KIS DI+ V+D HLIPS T GES VFYYKMKGDY+RYLA F +GD R+   + S++AY+ AS  A  EL PTHPIRLGLALNFSVFYYEI NSP++ACHLAKQAFD+AI+ELDTLSEESYKDSTLIMQLLRDNLTLWTSDI E G ++ Q+
Sbjct:   77 SEHQVELIRSYRSKIETELTKISDDILSVLDSHLIPSATTGESKVFYYKMKGDYHRYLAEFSSGDAREKATNSSLEAYKTASEIATTELPPTHPIRLGLALNFSVFYYEIQNSPDKACHLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDISESGQEDQQQ 247          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433C_TOBAC (14-3-3-like protein C OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.721e-64
Identity = 121/174 (69.54%), Postives = 143/174 (82.18%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 526
            +RGNE  V  I+EYR K+E ELSKI   I++++D  LIPS   G+S VFY KMKGDY+RYLA FKTG ERK  A+ ++ AY+AA   A  EL+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFDEAI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD+ +DG DE ++
Sbjct:   78 SRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKE 251          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14336_ORYSJ (14-3-3-like protein GF14-F OS=Oryza sativa subsp. japonica GN=GF14F PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.721e-64
Identity = 123/184 (66.85%), Postives = 148/184 (80.43%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAKDGEG 556
            +RGNE  V  IKEYR ++E ELSKI   I++++D HL+PS T  ES VFY KMKGDY+RYLA FK+G ERK  A+ ++ AY++A   A A+L  THPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFD+AI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD  EDGGDE +  + +  +GEG
Sbjct:   78 SRGNEAYVASIKEYRSRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKSGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGDEIK--EAAKPEGEG 259          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14334_ORYSJ (14-3-3-like protein GF14-D OS=Oryza sativa subsp. japonica GN=GF14D PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.248e-64
Identity = 120/182 (65.93%), Postives = 145/182 (79.67%), Query Frame = 2
Query:    8 RGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAKDGE 553
            RGN+     I+ YR K+EAEL++I   I+ ++D HL+PS    ES VFY KMKGDY+RYLA FK+GDERK  A+ +M AY+AA   A A+L+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFDEAISELD+L EESYKDSTLIMQLLRDNLTLWTSD  +DGGDE ++     + G+
Sbjct:   83 RGNDAHAATIRSYRGKIEAELARICDGILALLDSHLVPSAGAAESKVFYLKMKGDYHRYLAEFKSGDERKQAAESTMNAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGDEIKEAAAPKEPGD 264          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433_HELAN (14-3-3-like protein OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 120/174 (68.97%), Postives = 145/174 (83.33%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 526
            +RGNE  V  I++YR K+E+ELS I   I++V+D  LI S +GG+S VFY KMKGDYYRYLA FKTGDERK  A+ ++ AY+AA   A AEL+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFDEAI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD+ +D  +E ++
Sbjct:   79 SRGNEGHVSTIRDYRSKIESELSSICDGILKVLDSKLIGSASGGDSKVFYLKMKGDYYRYLAEFKTGDERKLAAENTLSAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQDDTAEEVKE 252          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433_OENEH (14-3-3-like protein OS=Oenothera elata subsp. hookeri PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 6.541e-64
Identity = 118/174 (67.82%), Postives = 143/174 (82.18%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 526
            +RGN+  V  I++YR K+E ELS I   I++++D  LIPS   G+S VFY KMKGDY+RYLA FKTG ERK  A+ ++ AY+AA   A AEL+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LA +AFDEAI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD+ +DGGDE ++
Sbjct:   78 SRGNDDHVSTIRDYRSKIETELSNICGGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLANEAFDEAIAELDTLEEESYKDSTLIMQLLRDNLTLWTSDMQDDGGDEIKE 251          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433A_HORVU (14-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.541e-64
Identity = 124/184 (67.39%), Postives = 146/184 (79.35%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAKDGEG 556
            +RGNE  V  IKEYR ++E ELSKI   I++++D HL+PS T  ES VFY KMKGDY+RYLA FK G ERK  A+ ++ AY++A   A A+L  THPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFDEAI+ELD+L EESYKDSTLIMQLLRDNLTLWTSD  E+GGDE  K   S  +GEG
Sbjct:   78 SRGNEAYVASIKEYRTRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKAGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDSLGEESYKDSTLIMQLLRDNLTLWTSDNAEEGGDEI-KEAASKPEGEG 260          
The following BLAST results are available for this feature:
BLAST of FC872422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
14331_MAIZE5.916e-6572.2514-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=... [more]
14332_MAIZE7.727e-6571.1114-3-3-like protein GF14-12 OS=Zea mays GN=GRF2 PE... [more]
1433_CHLRE1.009e-6466.8514-3-3-like protein OS=Chlamydomonas reinhardtii P... [more]
BMH2_YEAST1.318e-6470.18Protein BMH2 OS=Saccharomyces cerevisiae GN=BMH2 P... [more]
1433C_TOBAC1.721e-6469.5414-3-3-like protein C OS=Nicotiana tabacum PE=1 SV... [more]
14336_ORYSJ1.721e-6466.8514-3-3-like protein GF14-F OS=Oryza sativa subsp. ... [more]
14334_ORYSJ2.248e-6465.9314-3-3-like protein GF14-D OS=Oryza sativa subsp. ... [more]
1433_HELAN3.835e-6468.9714-3-3-like protein OS=Helianthus annuus PE=2 SV=1[more]
1433_OENEH6.541e-6467.8214-3-3-like protein OS=Oenothera elata subsp. hook... [more]
1433A_HORVU6.541e-6467.3914-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BE04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872422 ID=FC872422; Name=FC872422; organism=Citrus clementina; type=EST; length=819bp
GGGGGCCAGAGGGAATGAACTTAGTGTGAAAAGAATTAAAGAGTATAGGC
AAAAGGTAGAAGCTGAGCTGTCCAAGATCAGCACTGATATTATGCAAGTC
ATTGATGAGCATTTGATCCCTTCCTGCACCGGAGGTGAATCCACTGTGTT
TTACTATAAAATGAAAGGTGATTATTATCGGTACTTGGCATAGTTTAAGA
CTGGTGATGAAAGGAAAAATGTTGCTGATCTGTCAATGAAAGCCTATCAG
GCAGCTTCTACTACCGCAGAAGCTGAATTGTCTCCTACCCACCCCATCCG
ACTTGGTTTGGCCTTGAACTTCTCAGTTTTTTACTATGAGATTATGAACT
CTCCTGAAAGGGCATGCCACCTTGCAAAGCAGGCCTTTGATGAAGCCATC
TCAGAATTGGATACATTAAGTGAGGAATCTTACAAAGACAGCACGTTGAT
AATGCAGCTATTGAGGGACAACCTCACTCTTTGGACTTCTGACATACCAG
AGGATGGAGGTGATGAAGCCCAGAAAATGGACATCTCTGCTAAAGATGGT
GAAGGCGAAGATTGAAGAAGCAGAGTGAACCAGCCAGGAGCTTGGGAGCT
CTAGCATATGATAGCAAGGAAGCTGCAATACCTTTATGACTCCCGGTGTT
TTTCTTAGTTTACAAGAGACACTCAAGTACTGTTATTGTGCTGTTCCTAT
AATGTGGGTGTTATCTTCACTGTCAAGAGTTTCATGATTGGACTGCTTGT
ATCATTTGCATCCCAGAATCTTTTATATCTGCTGCTGCTGATCAAAAAAA
AAAAAAAAAAAAAAAAAAA
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