FC872422

Overview
NameFC872422
Unique NameFC872422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872422_ssr779 microsatellite FC872422_ssr779:779..790. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14331_ARATH (14-3-3-like protein GF14 chi OS=Arabidopsis thaliana GN=GRF1 PE=1 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 5.183e-61
Identity = 113/174 (64.94%), Postives = 143/174 (82.18%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 526
            +RGN+  V  I++YR K+E ELS I   I++++D  L+P+   G+S VFY KMKGDY+RYLA FK+G ERK+ A+ ++ AY+AA   A +EL+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFDEAI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD+ +D  D+ ++
Sbjct:   80 SRGNDDHVSLIRDYRSKIETELSDICDGILKLLDTILVPAAASGDSKVFYLKMKGDYHRYLAEFKSGQERKDAAEHTLTAYKAAQDIANSELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDVADDIKE 253          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14338_ARATH (14-3-3-like protein GF14 kappa OS=Arabidopsis thaliana GN=GRF8 PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 6.769e-61
Identity = 116/166 (69.88%), Postives = 137/166 (82.53%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPE 502
            +R NE  V  +K+YR KVE ELS I + I++++D HLIPS T  ES VFY KMKGDY+RYLA FK+GDERK  A+ +M AY+AA   A A+L+PTHPIRLGLALNFSVFYYEI+NS E+AC +AKQAF+EAI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD+ E
Sbjct:   78 SRKNEEHVSLVKDYRSKVETELSSICSGILRLLDSHLIPSATASESKVFYLKMKGDYHRYLAEFKSGDERKTAAEDTMIAYKAAQDVAVADLAPTHPIRLGLALNFSVFYYEILNSSEKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQE 243          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433E_TOBAC (14-3-3-like protein E OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.730e-60
Identity = 116/163 (71.17%), Postives = 135/163 (82.82%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 493
            +RGNE  V  IKEYR K+EAELSKI   I+ +++ HLIP  +  ES VFY KMKGDY+RYLA FKTG ERK  A+ ++ AY++A   A AEL+PTHPIRLGLALNFSVFYYEI+NS +RAC+LAKQAFD+AI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD
Sbjct:   76 SRGNEDHVSSIKEYRGKIEAELSKICDGILNLLESHLIPVASTAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSSDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD 238          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433A_TOBAC (14-3-3-like protein A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.484e-60
Identity = 114/174 (65.52%), Postives = 138/174 (79.31%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 526
            +RGNE  V  IK YR K+E+EL+ I   I++++D  LI +   G+S VFY KMKGDYYRYLA FKTG ERK  A+ ++ AY++A   A  EL+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAFDEAI+EL TL EESYKDSTLIMQL  DNLTLWTSD+ +DG DE ++
Sbjct:   74 SRGNEDHVASIKTYRSKIESELTSICNGILKLLDSKLIGTAATGDSKVFYLKMKGDYYRYLAEFKTGAERKEAAENTLSAYKSAQDIANGELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELGTLGEESYKDSTLIMQLFCDNLTLWTSDMQDDGTDEIKE 247          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433D_TOBAC (14-3-3-like protein D OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.277e-59
Identity = 113/165 (68.48%), Postives = 136/165 (82.42%), Query Frame = 2
Query:    8 RGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPE 502
            R NE  V  +K+YR KVE+ELS +   I++++D++LIPS   GES VFY KMKGDYYRYLA FK G+ERK  A+ +M AY+AA   A AEL+PTHPIRLGLALN+SVFYYEI+N+ E+AC +AKQAF+EAI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD+ E
Sbjct:   80 RKNEEHVVLVKDYRSKVESELSDVCAGILKILDQYLIPSAAAGESKVFYLKMKGDYYRYLAEFKVGNERKEAAEDTMLAYKAAQDIALAELAPTHPIRLGLALNYSVFYYEILNASEKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQE 244          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14331_SOLLC (14-3-3 protein 1 OS=Solanum lycopersicum GN=TFT1 PE=3 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.277e-59
Identity = 112/165 (67.88%), Postives = 137/165 (83.03%), Query Frame = 2
Query:    8 RGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPE 502
            R N+  V  +K+YR KVE+ELS +   I++++D++LIPS + GES VFY KMKGDYYRYLA FK G+ERK  A+ +M AY+AA   A AEL+PTHPIRLGLALNFSVFYYEI+N+ E+AC +AKQAF+EAI+ELDT+ EESYKDSTLIMQLLRDNLTLWTSD+ E
Sbjct:   80 RKNDEHVVLVKDYRSKVESELSDVCAGILKILDQYLIPSASAGESKVFYLKMKGDYYRYLAEFKVGNERKEAAEDTMLAYKAAQDIAVAELAPTHPIRLGLALNFSVFYYEILNASEKACSMAKQAFEEAIAELDTMGEESYKDSTLIMQLLRDNLTLWTSDMQE 244          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433_SPIOL (14-3-3-like protein (Fragment) OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.844e-59
Identity = 111/171 (64.91%), Postives = 139/171 (81.29%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 517
            +RGNE  V  I++YR ++E ELS     I++++D  L+P+ + G+S VFY KMKGDY+RYLA FKTG +RK  A+ ++ AY+AA   A AEL+PTHPIRLGLALNFSVFYYEI+NSP+RAC+LAKQAF EAI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD+ ++  DE
Sbjct:   31 SRGNEDHVSVIRDYRSRIEKELSDNCDGILKLLDTKLVPAASSGDSKVFYLKMKGDYHRYLAEFKTGAQRKEAAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFVEAIAELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQDEAADE 201          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14336_ARATH (14-3-3-like protein GF14 lambda OS=Arabidopsis thaliana GN=GRF6 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.844e-59
Identity = 110/166 (66.27%), Postives = 138/166 (83.13%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPE 502
            +R N+  V  +K+YR KVE+ELS + + I++++D HLIPS    ES VFY KMKGDY+RY+A FK+GDERK  A+ +M AY+AA   A A+++PTHPIRLGLALNFSVFYYEI+NS ++AC++AKQAF+EAI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD+ E
Sbjct:   78 SRKNDEHVSLVKDYRSKVESELSSVCSGILKLLDSHLIPSAGASESKVFYLKMKGDYHRYMAEFKSGDERKTAAEDTMLAYKAAQDIAAADMAPTHPIRLGLALNFSVFYYEILNSSDKACNMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQE 243          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433Z_BOMMO (14-3-3 protein zeta OS=Bombyx mori GN=14-3-3zeta PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.148e-58
Identity = 111/174 (63.79%), Postives = 136/174 (78.16%), Query Frame = 2
Query:   11 GNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMD 532
            G+E   +  KEYR KVE EL +I  D++ ++D+HLIP  +  ES VFY KMKGDYYRYLA   TG+ R +V + S KAYQ A   ++A++ PTHPIRLGLALNFSVFYYEI+NSP++AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD   DG + A+  D
Sbjct:   73 GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEPAEGGD 246          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14310_SOLLC (14-3-3 protein 10 OS=Solanum lycopersicum GN=TFT10 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 4.540e-57
Identity = 112/172 (65.12%), Postives = 137/172 (79.65%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEA 520
            +R NE  V  +KEYR KVE ELS++   I+++++ +L+PS T  ES VFY KMKGDYYRYLA FK GDERK  A+ +M +Y+AA   A  +L PTHPIRLGLALNFSVFY+EI+NS ++AC +AKQAF+EAI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD  +D  DE+
Sbjct:   82 SRKNEEHVHLVKEYRGKVENELSQVCAGILKLLESNLVPSATTSESKVFYLKMKGDYYRYLAEFKIGDERKQAAEDTMNSYKAAQEIALTDLPPTHPIRLGLALNFSVFYFEILNSSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD-AQDQLDES 252          
The following BLAST results are available for this feature:
BLAST of FC872422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
14331_ARATH5.183e-6164.9414-3-3-like protein GF14 chi OS=Arabidopsis thalia... [more]
14338_ARATH6.769e-6169.8814-3-3-like protein GF14 kappa OS=Arabidopsis thal... [more]
1433E_TOBAC5.730e-6071.1714-3-3-like protein E OS=Nicotiana tabacum PE=2 SV... [more]
1433A_TOBAC7.484e-6065.5214-3-3-like protein A OS=Nicotiana tabacum PE=2 SV... [more]
1433D_TOBAC1.277e-5968.4814-3-3-like protein D OS=Nicotiana tabacum PE=2 SV... [more]
14331_SOLLC1.277e-5967.8814-3-3 protein 1 OS=Solanum lycopersicum GN=TFT1 P... [more]
1433_SPIOL2.844e-5964.9114-3-3-like protein (Fragment) OS=Spinacia olerace... [more]
14336_ARATH2.844e-5966.2714-3-3-like protein GF14 lambda OS=Arabidopsis tha... [more]
1433Z_BOMMO9.148e-5863.7914-3-3 protein zeta OS=Bombyx mori GN=14-3-3zeta P... [more]
14310_SOLLC4.540e-5765.1214-3-3 protein 10 OS=Solanum lycopersicum GN=TFT10... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BE04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872422 ID=FC872422; Name=FC872422; organism=Citrus clementina; type=EST; length=819bp
GGGGGCCAGAGGGAATGAACTTAGTGTGAAAAGAATTAAAGAGTATAGGC
AAAAGGTAGAAGCTGAGCTGTCCAAGATCAGCACTGATATTATGCAAGTC
ATTGATGAGCATTTGATCCCTTCCTGCACCGGAGGTGAATCCACTGTGTT
TTACTATAAAATGAAAGGTGATTATTATCGGTACTTGGCATAGTTTAAGA
CTGGTGATGAAAGGAAAAATGTTGCTGATCTGTCAATGAAAGCCTATCAG
GCAGCTTCTACTACCGCAGAAGCTGAATTGTCTCCTACCCACCCCATCCG
ACTTGGTTTGGCCTTGAACTTCTCAGTTTTTTACTATGAGATTATGAACT
CTCCTGAAAGGGCATGCCACCTTGCAAAGCAGGCCTTTGATGAAGCCATC
TCAGAATTGGATACATTAAGTGAGGAATCTTACAAAGACAGCACGTTGAT
AATGCAGCTATTGAGGGACAACCTCACTCTTTGGACTTCTGACATACCAG
AGGATGGAGGTGATGAAGCCCAGAAAATGGACATCTCTGCTAAAGATGGT
GAAGGCGAAGATTGAAGAAGCAGAGTGAACCAGCCAGGAGCTTGGGAGCT
CTAGCATATGATAGCAAGGAAGCTGCAATACCTTTATGACTCCCGGTGTT
TTTCTTAGTTTACAAGAGACACTCAAGTACTGTTATTGTGCTGTTCCTAT
AATGTGGGTGTTATCTTCACTGTCAAGAGTTTCATGATTGGACTGCTTGT
ATCATTTGCATCCCAGAATCTTTTATATCTGCTGCTGCTGATCAAAAAAA
AAAAAAAAAAAAAAAAAAA
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