FC872422

Overview
NameFC872422
Unique NameFC872422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872422_ssr779 microsatellite FC872422_ssr779:779..790. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433B_SOYBN (14-3-3-like protein B (Fragment) OS=Glycine max GN=GF14B PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.556e-56
Identity = 105/165 (63.64%), Postives = 130/165 (78.79%), Query Frame = 2
Query:    8 RGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPE 502
            R N+  V  +K YR KVE EL+++   I+ ++D +L+PS +  ES VFY KMKGDY+RYLA FK GDERK   + +M +Y+AA   A A+L PTHPIRLGLALNFSVFYYEI+N  ++AC +AKQAF+EAI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD+ +
Sbjct:   78 RKNDDHVSLVKHYRSKVENELTQVCATILSLLDSNLVPSASASESKVFYLKMKGDYHRYLAEFKVGDERKTATEDTMLSYKAAQDIASADLPPTHPIRLGLALNFSVFYYEILNQSDKACAMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQD 242          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433B_PONAB (14-3-3 protein beta/alpha OS=Pongo abelii GN=YWHAB PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.563e-56
Identity = 106/170 (62.35%), Postives = 132/170 (77.65%), Query Frame = 2
Query:   14 NELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 523
            NE   +  KEYR+K+EAEL  I  D+++++D++LIP+ T  ES VFY KMKGDY+RYL+   +GD ++     S +AYQ A   ++ E+ PTHPIRLGLALNFSVFYYEI+NSPE+AC LAK AFDEAI+ELDTL+EESYKDSTLIMQLLRDNLTLWTS+   D GD  +
Sbjct:   74 NEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGE 243          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433B_MACFA (14-3-3 protein beta/alpha OS=Macaca fascicularis GN=YWHAB PE=2 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 8.563e-56
Identity = 106/170 (62.35%), Postives = 132/170 (77.65%), Query Frame = 2
Query:   14 NELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 523
            NE   +  KEYR+K+EAEL  I  D+++++D++LIP+ T  ES VFY KMKGDY+RYL+   +GD ++     S +AYQ A   ++ E+ PTHPIRLGLALNFSVFYYEI+NSPE+AC LAK AFDEAI+ELDTL+EESYKDSTLIMQLLRDNLTLWTS+   D GD  +
Sbjct:   74 NEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGE 243          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433B_HUMAN (14-3-3 protein beta/alpha OS=Homo sapiens GN=YWHAB PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 8.563e-56
Identity = 106/170 (62.35%), Postives = 132/170 (77.65%), Query Frame = 2
Query:   14 NELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 523
            NE   +  KEYR+K+EAEL  I  D+++++D++LIP+ T  ES VFY KMKGDY+RYL+   +GD ++     S +AYQ A   ++ E+ PTHPIRLGLALNFSVFYYEI+NSPE+AC LAK AFDEAI+ELDTL+EESYKDSTLIMQLLRDNLTLWTS+   D GD  +
Sbjct:   74 NEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGE 243          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 143B1_ONCMY (14-3-3 protein beta/alpha-1 OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.461e-55
Identity = 105/171 (61.40%), Postives = 131/171 (76.61%), Query Frame = 2
Query:   11 GNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 523
            GNE   +  +EYR+K+EAEL  I  D++ ++D +LI + T  ES VFY KMKGDYYRYL+   +GD +K   + S +AYQ A   ++ ++ PTHPIRLGLALNFSVFYYEI+NSPE+AC LAK AFDEAI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTS+   D GD  +
Sbjct:   71 GNEKKQQMAREYREKIEAELQDICKDVLALLDNYLIANATQAESKVFYLKMKGDYYRYLSEVASGDSKKTTVENSQQAYQEAFDISKKDMQPTHPIRLGLALNFSVFYYEILNSPEQACSLAKAAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSENQGDEGDAGE 241          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 143G2_ONCMY (14-3-3 protein gamma-2 OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.908e-55
Identity = 105/176 (59.66%), Postives = 133/176 (75.57%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSC--TGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQK 526
            A GNE  ++ ++ YR+K+E EL  +  D++ ++D +LI +C  T  ES VFY KMKGDYYRYLA   TG++R  V + S KAY  A   ++  + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AI+ELDTL+E+SY+DSTLIMQLLRDNLTLWTSD  +D G E  K
Sbjct:   72 ADGNEKKIEMVRAYREKIEKELEAVCQDVLNLLDNYLIKNCNETQHESKVFYLKMKGDYYRYLAEVATGEKRATVIESSEKAYNEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYQDSTLIMQLLRDNLTLWTSDQQDDEGGEGNK 247          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433G_RAT (14-3-3 protein gamma OS=Rattus norvegicus GN=Ywhag PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.908e-55
Identity = 105/173 (60.69%), Postives = 132/173 (76.30%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSC--TGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 517
            A GNE  ++ ++ YR+K+E EL  +  D++ ++D +LI +C  T  ES VFY KMKGDYYRYLA   TG++R  V + S KAY  A   ++  + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD  +D G E
Sbjct:   72 ADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGE 244          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433G_PONAB (14-3-3 protein gamma OS=Pongo abelii GN=YWHAG PE=2 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.908e-55
Identity = 105/173 (60.69%), Postives = 132/173 (76.30%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSC--TGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 517
            A GNE  ++ ++ YR+K+E EL  +  D++ ++D +LI +C  T  ES VFY KMKGDYYRYLA   TG++R  V + S KAY  A   ++  + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD  +D G E
Sbjct:   72 ADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGE 244          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433G_MOUSE (14-3-3 protein gamma OS=Mus musculus GN=Ywhag PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.908e-55
Identity = 105/173 (60.69%), Postives = 132/173 (76.30%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSC--TGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 517
            A GNE  ++ ++ YR+K+E EL  +  D++ ++D +LI +C  T  ES VFY KMKGDYYRYLA   TG++R  V + S KAY  A   ++  + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD  +D G E
Sbjct:   72 ADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGE 244          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433G_HUMAN (14-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.908e-55
Identity = 105/173 (60.69%), Postives = 132/173 (76.30%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSC--TGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 517
            A GNE  ++ ++ YR+K+E EL  +  D++ ++D +LI +C  T  ES VFY KMKGDYYRYLA   TG++R  V + S KAY  A   ++  + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD  +D G E
Sbjct:   72 ADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGE 244          
The following BLAST results are available for this feature:
BLAST of FC872422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433B_SOYBN6.556e-5663.6414-3-3-like protein B (Fragment) OS=Glycine max GN... [more]
1433B_PONAB8.563e-5662.3514-3-3 protein beta/alpha OS=Pongo abelii GN=YWHAB... [more]
1433B_MACFA8.563e-5662.3514-3-3 protein beta/alpha OS=Macaca fascicularis G... [more]
1433B_HUMAN8.563e-5662.3514-3-3 protein beta/alpha OS=Homo sapiens GN=YWHAB... [more]
143B1_ONCMY1.461e-5561.4014-3-3 protein beta/alpha-1 OS=Oncorhynchus mykiss... [more]
143G2_ONCMY1.908e-5559.6614-3-3 protein gamma-2 OS=Oncorhynchus mykiss PE=2... [more]
1433G_RAT1.908e-5560.6914-3-3 protein gamma OS=Rattus norvegicus GN=Ywhag... [more]
1433G_PONAB1.908e-5560.6914-3-3 protein gamma OS=Pongo abelii GN=YWHAG PE=2... [more]
1433G_MOUSE1.908e-5560.6914-3-3 protein gamma OS=Mus musculus GN=Ywhag PE=1... [more]
1433G_HUMAN1.908e-5560.6914-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BE04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872422 ID=FC872422; Name=FC872422; organism=Citrus clementina; type=EST; length=819bp
GGGGGCCAGAGGGAATGAACTTAGTGTGAAAAGAATTAAAGAGTATAGGC
AAAAGGTAGAAGCTGAGCTGTCCAAGATCAGCACTGATATTATGCAAGTC
ATTGATGAGCATTTGATCCCTTCCTGCACCGGAGGTGAATCCACTGTGTT
TTACTATAAAATGAAAGGTGATTATTATCGGTACTTGGCATAGTTTAAGA
CTGGTGATGAAAGGAAAAATGTTGCTGATCTGTCAATGAAAGCCTATCAG
GCAGCTTCTACTACCGCAGAAGCTGAATTGTCTCCTACCCACCCCATCCG
ACTTGGTTTGGCCTTGAACTTCTCAGTTTTTTACTATGAGATTATGAACT
CTCCTGAAAGGGCATGCCACCTTGCAAAGCAGGCCTTTGATGAAGCCATC
TCAGAATTGGATACATTAAGTGAGGAATCTTACAAAGACAGCACGTTGAT
AATGCAGCTATTGAGGGACAACCTCACTCTTTGGACTTCTGACATACCAG
AGGATGGAGGTGATGAAGCCCAGAAAATGGACATCTCTGCTAAAGATGGT
GAAGGCGAAGATTGAAGAAGCAGAGTGAACCAGCCAGGAGCTTGGGAGCT
CTAGCATATGATAGCAAGGAAGCTGCAATACCTTTATGACTCCCGGTGTT
TTTCTTAGTTTACAAGAGACACTCAAGTACTGTTATTGTGCTGTTCCTAT
AATGTGGGTGTTATCTTCACTGTCAAGAGTTTCATGATTGGACTGCTTGT
ATCATTTGCATCCCAGAATCTTTTATATCTGCTGCTGCTGATCAAAAAAA
AAAAAAAAAAAAAAAAAAA
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