FC872422

Overview
NameFC872422
Unique NameFC872422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872422_ssr779 microsatellite FC872422_ssr779:779..790. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433G_CHICK (14-3-3 protein gamma OS=Gallus gallus GN=YWHAG PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.908e-55
Identity = 105/173 (60.69%), Postives = 132/173 (76.30%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSC--TGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 517
            A GNE  ++ ++ YR+K+E EL  +  D++ ++D +LI +C  T  ES VFY KMKGDYYRYLA   TG++R  V + S KAY  A   ++  + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD  +D G E
Sbjct:   72 ADGNEKKIEMVRAYREKIEKELGAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGE 244          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433G_BOVIN (14-3-3 protein gamma OS=Bos taurus GN=YWHAG PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.491e-55
Identity = 105/173 (60.69%), Postives = 132/173 (76.30%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSC--TGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 517
            A GNE  ++ ++ YR+K+E EL  +  D++ ++D +LI +C  T  ES VFY KMKGDYYRYLA   TG++R  V + S KAY  A   ++  + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD  +D G E
Sbjct:   72 ADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQIESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGE 244          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433B_XENTR (14-3-3 protein beta/alpha OS=Xenopus tropicalis GN=ywhab PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.491e-55
Identity = 104/171 (60.82%), Postives = 132/171 (77.19%), Query Frame = 2
Query:   11 GNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 523
            GN+   +  +EYR+KVE EL  I  D++ ++D++L+P+ T  ES VFY KMKGDYYRYL+   +GD ++     S +AYQ A   +++E+ PTHPIRLGLALNFSVFYYEI+NSPE+AC LAK AFDEAI+ELDTL+EESYKDSTLIMQLLRDNLTLWTS+   +  D A+
Sbjct:   71 GNDKRQQMAREYREKVETELQDICKDVLGLLDKYLVPNATPPESKVFYLKMKGDYYRYLSEVASGDSKQETVTCSQQAYQEAFEISKSEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKSAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGEEADNAE 241          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 143GB_XENLA (14-3-3 protein gamma-B OS=Xenopus laevis GN=ywhag-B PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.250e-55
Identity = 105/173 (60.69%), Postives = 131/173 (75.72%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSC--TGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 517
            A GNE  ++ ++ YR+K+E EL  +  D++ ++D  LI +C  T  ES VFY KMKGDYYRYLA   TG++R  V + S KAY  A   ++  + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD  +D G E
Sbjct:   72 ADGNEKKIEMVRAYREKIEKELEAVCQDVLNLLDNFLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGE 244          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 143GA_XENLA (14-3-3 protein gamma-A OS=Xenopus laevis GN=ywhag-A PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.250e-55
Identity = 105/173 (60.69%), Postives = 131/173 (75.72%), Query Frame = 2
Query:    5 ARGNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSC--TGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDE 517
            A GNE  ++ ++ YR+K+E EL  +  D++ ++D  LI +C  T  ES VFY KMKGDYYRYLA   TG++R  V + S KAY  A   ++  + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD  +D G E
Sbjct:   72 ADGNEKKIEMVRAYREKIEKELETVCQDVLSLLDNFLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGE 244          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 143BA_XENLA (14-3-3 protein beta/alpha-A OS=Xenopus laevis GN=ywhab-A PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.250e-55
Identity = 106/174 (60.92%), Postives = 133/174 (76.44%), Query Frame = 2
Query:   11 GNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMD 532
            GN+   +  +EYR+KVE EL  I  D++ ++D  L+P+ T  ES VFY KMKGDYYRYL+   +GD ++     S +AYQ A   +++E+ PTHPIRLGLALNFSVFYYEI+NSPE+AC LAK AFDEAI+ELDTL+EESYKDSTLIMQLLRDNLTLWTS   E+ G+EA  ++
Sbjct:   71 GNDKRQQMAREYREKVETELQDICKDVLDLLDRFLVPNATPPESKVFYLKMKGDYYRYLSEVASGDSKQETVASSQQAYQEAFEISKSEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKSAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTS---ENQGEEADNVE 241          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433B_RAT (14-3-3 protein beta/alpha OS=Rattus norvegicus GN=Ywhab PE=1 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 5.550e-55
Identity = 105/170 (61.76%), Postives = 132/170 (77.65%), Query Frame = 2
Query:   14 NELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 523
            NE   +  KEYR+K+EAEL  I +D+++++D++LI + T  ES VFY KMKGDY+RYL+   +GD ++     S +AYQ A   ++ E+ PTHPIRLGLALNFSVFYYEI+NSPE+AC LAK AFDEAI+ELDTL+EESYKDSTLIMQLLRDNLTLWTS+   D GD  +
Sbjct:   74 NEKKQQMGKEYREKIEAELQDICSDVLELLDKYLILNATHAESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGE 243          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 14332_CAEEL (14-3-3-like protein 2 OS=Caenorhabditis elegans GN=ftt-2 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.550e-55
Identity = 104/168 (61.90%), Postives = 130/168 (77.38%), Query Frame = 2
Query:   11 GNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGD 514
            G+E   +  KEYR+KVE EL  I  D++ ++D+ LIP     ES VFY KMKGDYYRYLA   +GD+R +V + S ++YQ A   A+ ++ PTHPIRLGLALNFSVF+YEI+N+P++AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD   D  D
Sbjct:   73 GSEKKQQMAKEYREKVEKELRDICQDVLNLLDKFLIPKAGAAESKVFYLKMKGDYYRYLAEVASGDDRNSVVEKSQQSYQEAFDIAKDKMQPTHPIRLGLALNFSVFFYEILNAPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDAATDDTD 240          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433_XENLA (14-3-3-like protein (Fragment) OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.249e-55
Identity = 106/174 (60.92%), Postives = 132/174 (75.86%), Query Frame = 2
Query:   11 GNELSVKRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMD 532
            GN+   +  +EYR+KVE EL  I  D++ ++D  L+P+ T  ES VFY KMKGDYYRYL+   +GD ++     S +AYQ A   +++E+ PTHPIRLGLALNFSVFYYEI+NSPE+AC LAK AFDEAI ELDTL+EESYKDSTLIMQLLRDNLTLWTS   E+ G+EA  ++
Sbjct:   62 GNDKRQQMAREYREKVETELQDICKDVLDLLDRFLVPNATPPESKVFYLKMKGDYYRYLSEVASGDSKQETVASSQQAYQEAFEISKSEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKSAFDEAIRELDTLNEESYKDSTLIMQLLRDNLTLWTS---ENQGEEADNVE 232          
BLAST of FC872422 vs. ExPASy Swiss-Prot
Match: 1433Z_DROME (14-3-3 protein zeta OS=Drosophila melanogaster GN=14-3-3zeta PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.249e-55
Identity = 105/165 (63.64%), Postives = 130/165 (78.79%), Query Frame = 2
Query:   38 KEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLA*FKTGDERKNVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDI------PEDGGD 514
            +EYR++VE EL +I  +++ ++D++LIP  +  ES VFY KMKGDYYRYLA   TGD R  V D S  AYQ A   ++ ++ PTHPIRLGLALNFSVFYYEI+NSP++AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD       P++GGD
Sbjct:   83 REYRERVEKELREICYEVLGLLDKYLIPKASNPESKVFYLKMKGDYYRYLAEVATGDARNTVVDDSQTAYQDAFDISKGKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDEAEPQEGGD 247          
The following BLAST results are available for this feature:
BLAST of FC872422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433G_CHICK1.908e-5560.6914-3-3 protein gamma OS=Gallus gallus GN=YWHAG PE=... [more]
1433G_BOVIN2.491e-5560.6914-3-3 protein gamma OS=Bos taurus GN=YWHAG PE=1 S... [more]
1433B_XENTR2.491e-5560.8214-3-3 protein beta/alpha OS=Xenopus tropicalis GN... [more]
143GB_XENLA4.250e-5560.6914-3-3 protein gamma-B OS=Xenopus laevis GN=ywhag-... [more]
143GA_XENLA4.250e-5560.6914-3-3 protein gamma-A OS=Xenopus laevis GN=ywhag-... [more]
143BA_XENLA4.250e-5560.9214-3-3 protein beta/alpha-A OS=Xenopus laevis GN=y... [more]
1433B_RAT5.550e-5561.7614-3-3 protein beta/alpha OS=Rattus norvegicus GN=... [more]
14332_CAEEL5.550e-5561.9014-3-3-like protein 2 OS=Caenorhabditis elegans GN... [more]
1433_XENLA7.249e-5560.9214-3-3-like protein (Fragment) OS=Xenopus laevis P... [more]
1433Z_DROME7.249e-5563.6414-3-3 protein zeta OS=Drosophila melanogaster GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BE04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872422 ID=FC872422; Name=FC872422; organism=Citrus clementina; type=EST; length=819bp
GGGGGCCAGAGGGAATGAACTTAGTGTGAAAAGAATTAAAGAGTATAGGC
AAAAGGTAGAAGCTGAGCTGTCCAAGATCAGCACTGATATTATGCAAGTC
ATTGATGAGCATTTGATCCCTTCCTGCACCGGAGGTGAATCCACTGTGTT
TTACTATAAAATGAAAGGTGATTATTATCGGTACTTGGCATAGTTTAAGA
CTGGTGATGAAAGGAAAAATGTTGCTGATCTGTCAATGAAAGCCTATCAG
GCAGCTTCTACTACCGCAGAAGCTGAATTGTCTCCTACCCACCCCATCCG
ACTTGGTTTGGCCTTGAACTTCTCAGTTTTTTACTATGAGATTATGAACT
CTCCTGAAAGGGCATGCCACCTTGCAAAGCAGGCCTTTGATGAAGCCATC
TCAGAATTGGATACATTAAGTGAGGAATCTTACAAAGACAGCACGTTGAT
AATGCAGCTATTGAGGGACAACCTCACTCTTTGGACTTCTGACATACCAG
AGGATGGAGGTGATGAAGCCCAGAAAATGGACATCTCTGCTAAAGATGGT
GAAGGCGAAGATTGAAGAAGCAGAGTGAACCAGCCAGGAGCTTGGGAGCT
CTAGCATATGATAGCAAGGAAGCTGCAATACCTTTATGACTCCCGGTGTT
TTTCTTAGTTTACAAGAGACACTCAAGTACTGTTATTGTGCTGTTCCTAT
AATGTGGGTGTTATCTTCACTGTCAAGAGTTTCATGATTGGACTGCTTGT
ATCATTTGCATCCCAGAATCTTTTATATCTGCTGCTGCTGATCAAAAAAA
AAAAAAAAAAAAAAAAAAA
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