FC872427

Overview
NameFC872427
Unique NameFC872427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length823
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9949 contig Ccv1_Contig9949:1..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: TDH_LEGPA (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Paris) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  120 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLP--LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 524
            +++D PVP+       +VL+++  + +C TD+H +  D  A+  +P  +  GHE  G IV +G   +  LKVGQ V  +    +C  C NCR G    C      G +  G F +Y    A +V  +PD +  EQAA
Sbjct:   14 WMQDIPVPEYG---VNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGK-EVQGLKVGQRVSGEGHI-TCGFCRNCRAGKRHLCRNTLGVGVNRPGCFAEYLALPATNVIALPDNITEEQAA 145          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 61/229 (26.64%), Postives = 93/229 (40.61%), Query Frame = 3
Query:  168 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ---AQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDM 788
            EV +++  + VCHTD +   G  P +   P++ GHEGAG + ++G+G +T LK G  V I      C +C+ C       C +    Q  G   DG                  TF +Y V     V  I    PL++   + C   T Y A +N +K  PG                     A   R+I ID   DK      +GA + +      +P+ F K+I+++
Sbjct:   34 EVRIKIIATAVCHTDAYTLSGADP-EGCFPVILGHEGAGIVESVGEG-VTKLKAGDTV-IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATECI------NPQDFSKSIQEV 253          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 58/222 (26.13%), Postives = 90/222 (40.54%), Query Frame = 3
Query:  159 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC----------------SQAQCSGYSVDG-----TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDP 758
            K  EV V++  +G+C +D H   G   +  + P++ GHE AG + ++G+G +T  K G  V I      C +C  C+      C                S+  C G S+       TF +Y V     V  I +  PLE+   I C   T Y + +N+ K +PG                     A   R+I +D   DK       GA + ++ KD++ P
Sbjct:   32 KRHEVRVKIVATGICRSDDHVISGAL-SDMKFPVILGHEAAGVVESVGEG-VTKFKPGDKV-IPLFVPQCGECRCCKNPESNLCYKNDIGKYDGVLLDKTSRFTCKGKSIHNFISTSTFTEYTVLDEIAVAKIHEDAPLEKVCLIGCGFSTGYGSAVNTGKVKPGSTCAVFGLGGVGLSVIIGCKVAGASRIIGVDLNSDKFTTAKECGATECINPKDYNIP 250          
The following BLAST results are available for this feature:
BLAST of FC872427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
TDH_LEGPA8.444e-1132.85L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
ADHX_RAT8.444e-1126.64Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADH1_RANPE8.444e-1126.13Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872427 ID=FC872427; Name=FC872427; organism=Citrus clementina; type=EST; length=823bp
GGGGACTCTCTCTTTCTCTCACCAACAACTCTACAGCAATCAAAACTATG
TCACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGA
CCACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGG
CTGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTA
TGCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCG
TCTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCG
GAGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAA
TGGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGA
GGCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTT
TCCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGAC
GGATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGT
CTATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCA
TTGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCC
GCCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAA
ACTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCAAGGATCACT
CGGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGTGCGATGGCGTA
GGACCTCACGCTGCTGTAGTTGC
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