FC872427

Overview
NameFC872427
Unique NameFC872427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length823
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_STAAR (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=adh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 85/247 (34.41%), Postives = 121/247 (48.99%), Query Frame = 3 
Query:   81 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            AA V KDH  +I+  K         LKPGE LV+ +Y GVCHTDLH    D+     + L  GHEG G ++ + +  + +LK+G  V I W+ +SC  CE C  G E  C   + +GY+VDG   +  +  A +   +P+ L    A+ I CAGVT Y+A+  S  +PGQ+                    MG +++A D  DDK       GAD  ++ KD  DP   +  +  + D  G  A VV
Sbjct:    3 AAVVTKDHKVSIEDKKLRA------LKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAED-VESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKD-VDP---VAEVMKLTDNKGLDATVV 236
[Close]
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_STAAN (Alcohol dehydrogenase OS=Staphylococcus aureus (strain N315) GN=adh PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 85/247 (34.41%), Postives = 121/247 (48.99%), Query Frame = 3 
Query:   81 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            AA V KDH  +I+  K         LKPGE LV+ +Y GVCHTDLH    D+     + L  GHEG G ++ + +  + +LK+G  V I W+ +SC  CE C  G E  C   + +GY+VDG   +  +  A +   +P+ L    A+ I CAGVT Y+A+  S  +PGQ+                    MG +++A D  DDK       GAD  ++ KD  DP   +  +  + D  G  A VV
Sbjct:    3 AAVVTKDHKVSIEDKKLRA------LKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAED-VESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKD-VDP---VAEVMKLTDNKGLDATVV 236
[Close]
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_STAAM (Alcohol dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=adh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 85/247 (34.41%), Postives = 121/247 (48.99%), Query Frame = 3 
Query:   81 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            AA V KDH  +I+  K         LKPGE LV+ +Y GVCHTDLH    D+     + L  GHEG G ++ + +  + +LK+G  V I W+ +SC  CE C  G E  C   + +GY+VDG   +  +  A +   +P+ L    A+ I CAGVT Y+A+  S  +PGQ+                    MG +++A D  DDK       GAD  ++ KD  DP   +  +  + D  G  A VV
Sbjct:    3 AAVVTKDHKVSIEDKKLRA------LKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAED-VESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKD-VDP---VAEVMKLTDNKGLDATVV 236
[Close]
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_STAAC (Alcohol dehydrogenase OS=Staphylococcus aureus (strain COL) GN=adh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 85/247 (34.41%), Postives = 121/247 (48.99%), Query Frame = 3 
Query:   81 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            AA V KDH  +I+  K         LKPGE LV+ +Y GVCHTDLH    D+     + L  GHEG G ++ + +  + +LK+G  V I W+ +SC  CE C  G E  C   + +GY+VDG   +  +  A +   +P+ L    A+ I CAGVT Y+A+  S  +PGQ+                    MG +++A D  DDK       GAD  ++ KD  DP   +  +  + D  G  A VV
Sbjct:    3 AAVVTKDHKVSIEDKKLRA------LKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAED-VESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKD-VDP---VAEVMKLTDNKGLDATVV 236
[Close]
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_STAAB (Alcohol dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=adh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 85/247 (34.41%), Postives = 121/247 (48.99%), Query Frame = 3 
Query:   81 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            AA V KDH  +I+  K         LKPGE LV+ +Y GVCHTDLH    D+     + L  GHEG G ++ + +  + +LK+G  V I W+ +SC  CE C  G E  C   + +GY+VDG   +  +  A +   +P+ L    A+ I CAGVT Y+A+  S  +PGQ+                    MG +++A D  DDK       GAD  ++ KD  DP   +  +  + D  G  A VV
Sbjct:    3 AAVVTKDHKVSIEDKKLRA------LKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAED-VESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKD-VDP---VAEVMKLTDNKGLDATVV 236
[Close]
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_STAA8 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325) GN=adh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 85/247 (34.41%), Postives = 121/247 (48.99%), Query Frame = 3 
Query:   81 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            AA V KDH  +I+  K         LKPGE LV+ +Y GVCHTDLH    D+     + L  GHEG G ++ + +  + +LK+G  V I W+ +SC  CE C  G E  C   + +GY+VDG   +  +  A +   +P+ L    A+ I CAGVT Y+A+  S  +PGQ+                    MG +++A D  DDK       GAD  ++ KD  DP   +  +  + D  G  A VV
Sbjct:    3 AAVVTKDHKVSIEDKKLRA------LKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAED-VESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKD-VDP---VAEVMKLTDNKGLDATVV 236
[Close]
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_STAA3 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=adh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 85/247 (34.41%), Postives = 121/247 (48.99%), Query Frame = 3 
Query:   81 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            AA V KDH  +I+  K         LKPGE LV+ +Y GVCHTDLH    D+     + L  GHEG G ++ + +  + +LK+G  V I W+ +SC  CE C  G E  C   + +GY+VDG   +  +  A +   +P+ L    A+ I CAGVT Y+A+  S  +PGQ+                    MG +++A D  DDK       GAD  ++ KD  DP   +  +  + D  G  A VV
Sbjct:    3 AAVVTKDHKVSIEDKKLRA------LKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAED-VESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKD-VDP---VAEVMKLTDNKGLDATVV 236
[Close]
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_STAEQ (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=adh PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32
Identity = 83/247 (33.60%), Postives = 120/247 (48.58%), Query Frame = 3 
Query:   81 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            AA V KDH  +I+        +  +LKPGE LV+ +Y GVCHTDLH    D+     + L  GHEG G ++ + D  + +LKVG  V I W+  +C +CE C  G E  C     +GY+VDG   +  +  A +   +P+ L    A+ I CAGVT Y+A+  S   PGQ+                    MG +V+A D  DDK       GAD  ++   + DP   I+ +  + +  G  A V+
Sbjct:    3 AAVVTKDHRVSIE------EKRLRELKPGEALVKTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGRVIEVADN-VDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGYTVDGAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGIEPGQWLGVFGVGGLGNLALQYAKNVMGAKVVAFDINDDKLNFAKELGADAIIN-STNVDP---IEEVNRLTNNKGLDATVI 236
[Close]
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_STAES (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=adh PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.644e-32
Identity = 83/247 (33.60%), Postives = 120/247 (48.58%), Query Frame = 3 
Query:   81 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            AA V KDH  +I+        +  +L+PGE LV+ +Y GVCHTDLH    D+     + L  GHEG G ++ I D  + +LKVG  V I W+  +C +CE C  G E  C     +GY+VDG   +  +  A +   +P+ L    A+ I CAGVT Y+A+  S   PGQ+                    MG +V+A D  DDK       GAD  ++   + DP   I+ +  + +  G  A V+
Sbjct:    3 AAVVTKDHRVSIE------EKRLRELRPGEALVKTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGRVIKIADN-VDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGYTVDGAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGIEPGQWLGVFGVGGLGNLALQYAKNVMGAKVVAFDINDDKLNFAKELGADAIIN-STNVDP---IEEVNRLTNNKGLDATVI 236
[Close]
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH1_ZYMMO (Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=adhA PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.480e-31
Identity = 84/247 (34.01%), Postives = 119/247 (48.18%), Query Frame = 3 
Query:   81 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            AA + KDH   +   K  P      LK GE L+ ++Y GVCHTDLH   GD+  +     + GHEG G +  +G+G +T+LKVG    + W    C  CE C  G E  C   + +GY+VDG   +  +  A +   +PDGL    A+ I CAGVT Y+A+  S+ +PGQ+                       +VIAID  D++       GAD  ++ K+    E   K I++   G   HA VV
Sbjct:    3 AAVITKDHTIEVKDTKLRP------LKYGEALLEMEYCGVCHTDLHVKNGDFGDETGR--ITGHEGIGIVKQVGEG-VTSLKVGDRASVAWFFKGCGHCEYCVSGNETLCRNVENAGYTVDGAMAEECIVVADYSVKVPDGLDPAVASSITCAGVTTYKAVKVSQIQPGQWLAIYGLGGLGNLALQYAKNVFNAKVIAIDVNDEQLAFAKELGADMVINPKN----EDAAKIIQEKVGGA--HATVV 234
The following BLAST results are available for this feature:
BLAST of FC872427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
ADH_STAAR1.581e-3334.41Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAN1.581e-3334.41Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAM1.581e-3334.41Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAC1.581e-3334.41Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAB1.581e-3334.41Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAA81.581e-3334.41Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAA31.581e-3334.41Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAEQ3.895e-3233.60Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH_STAES6.644e-3233.60Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH1_ZYMMO1.480e-3134.01Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=ad... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3AB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872427 ID=FC872427; Name=FC872427; organism=Citrus clementina; type=EST; length=823bp
GGGGACTCTCTCTTTCTCTCACCAACAACTCTACAGCAATCAAAACTATG
TCACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGA
CCACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGG
CTGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTA
TGCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCG
TCTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCG
GAGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAA
TGGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGA
GGCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTT
TCCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGAC
GGATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGT
CTATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCA
TTGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCC
GCCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAA
ACTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCAAGGATCACT
CGGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGTGCGATGGCGTA
GGACCTCACGCTGCTGTAGTTGC
back to top