FC872427

Overview
NameFC872427
Unique NameFC872427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length823
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9949 contig Ccv1_Contig9949:1..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 65/222 (29.28%), Postives = 104/222 (46.85%), Query Frame = 3
Query:  153 DLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVD-------GTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCAS-YGADKFVDFKDHSDPEKFIKAIKDMCD 794
            +++  +V +R+ + GVC+ D+  W  +       PLV GHE AG +  +G   +   KVG +VG+    +SC DCENC   +E  CS+   +  SVD       G +  + + + R+   IP   PL +AAP+LCAG+TVY  ++                        ++  A GL+V    T + KR+   +  GAD FV   D +  E    ++  + D
Sbjct:   31 EVQSEDVSLRITHCGVCYADV-IWTRNMFNDSIYPLVPGHEIAGVVTEVG-ADVKGFKVGDHVGVGVYVNSCQDCENCNSSLENHCSKCVVTYNSVDSDGTVTKGGYSSHILVHQRYCFKIPADYPLSKAAPLLCAGITVYTPMIRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVFSTSESKREEAINLLGADNFVISSDENQMESLKSSLHFIID 250          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 71/222 (31.98%), Postives = 103/222 (46.40%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ-------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCAS-YGADKFVDFKDHSDPEKFIKAIKDMCDGV 800
            P +V+VRV Y G+CH+DL     +       P+V GHE  G +  IG   +   KVG++VG+  +  SC  C NC   +E  CS+           G    G F    V     V  IP+ LPLEQAAP+LCAGVTVY  + +     PG+                + A A GL V  I + D K++      GAD ++  KD    ++  +++  + D +
Sbjct:   34 PEDVIVRVIYCGICHSDLVQMHNEM-GMSNYPMVPGHEVVGVVTEIGS-EVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGK-KCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEALEVLGADAYLVSKDAEKMQEAAESLDYIMDTI 252          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 3
Query:  153 DLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYS--------VDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 563
            D  P +V + + ++G+CH+D+H  K +W  +P  P+V GHE AG + A+G   +T  + G  VG+    DSC +C +C  GIE  C       Y+          G + +  V    +V  IPD LPL+ AAP+LCAG+T+Y  L
Sbjct:   25 DPGPHDVAIDIKFAGICHSDIHTVKAEW-GQPNYPVVPGHEIAGVVTAVGS-EVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPL 167          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 3
Query:  153 DLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYS--------VDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 563
            D  P +V + + ++G+CH+D+H  K +W  +P  P+V GHE AG + A+G   +T  + G  VG+    DSC +C +C  GIE  C       Y+          G + +  V    +V  IPD LPL+ AAP+LCAG+T+Y  L
Sbjct:   25 DPGPHDVAIDIKFAGICHSDIHTVKAEW-GQPNYPVVPGHEIAGVVTAVGS-EVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPL 167          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.063e-21
Identity = 71/218 (32.57%), Postives = 105/218 (48.17%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ-------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCAS-YGADKFVDFKDHSDPEKFIKAIKDM 788
            P +V+V+V Y G+CH+DL   + +       P+V GHE  G +  IG   +   KVG++VG+  +  SC  C NC + +E  CS+           G    G F    V     V  IP+ LPLEQAAP+LCAGVTV+  + + +   PG+                + A A GL V  I + D K++      GAD ++  K   D EK ++A + +
Sbjct:   34 PEDVIVKVIYCGICHSDLVQMRNEM-GMSHYPMVPGHEVVGIVTEIGS-EVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGK-KCGILGLGGVGHLGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSK---DTEKMMEAAESL 245          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.063e-21
Identity = 71/218 (32.57%), Postives = 105/218 (48.17%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ-------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCAS-YGADKFVDFKDHSDPEKFIKAIKDM 788
            P +V+V+V Y G+CH+DL   + +       P+V GHE  G +  IG   +   KVG++VG+  +  SC  C NC + +E  CS+           G    G F    V     V  IP+ LPLEQAAP+LCAGVTV+  + + +   PG+                + A A GL V  I + D K++      GAD ++  K   D EK ++A + +
Sbjct:   34 PEDVIVKVIYCGICHSDLVQMRNEM-GMSHYPMVPGHEVVGIVTEIGS-EVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGK-KCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSK---DTEKMMEAAESL 245          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.063e-21
Identity = 69/227 (30.40%), Postives = 102/227 (44.93%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC-------SQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAV 818
            P +V +R+   G+CHTDLH  K D       P+V GHE  G +V +G   ++   VG  VG+  L   C  C  C   +E  C       +    +G    G F +  V + + V  IP+G+ +EQAAP+LCAGVTVY  L +   +                   + A AMG  V  I + + KR +     GAD +V   D +   +   ++  + D V  H A+
Sbjct:   34 PEDVNIRIICCGICHTDLHQTKNDL-GMSNYPMVPGHEVVGEVVEVGSD-VSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHAL 258          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.389e-21
Identity = 67/203 (33.00%), Postives = 93/203 (45.81%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRK-LCASYGADKFVDFKD 746
            P +V +++ Y GVCH+DLH  K D       P+V GHE  G ++ +G   +T  KVG+ VG+  L   C  C  C   IE  C++   S       G    G F +  V   + V  IP+GL  EQ AP+LCAGVTVY  L +   +                   + A A+G  V  I + D K+K      GAD ++   D
Sbjct:   35 PDDVYIKIHYCGVCHSDLHQIKNDL-GMSNYPMVPGHEVVGEVLEVGSN-VTRFKVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSD 235          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.814e-21
Identity = 71/213 (33.33%), Postives = 97/213 (45.54%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEA-------TCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFKDHSDPEKFIKA 776
            P +V V+V Y G+CH+DLH  K D       PLV GHE  G +V +G   ++  KVG  VG+  L  SC +C  C+  IE         C+     G    G F    V     V  IP+G+  EQAAP+LCAG+TVY    +       +               + A AMG  V  I + + KR+    + GAD   D+   SD +K  +A
Sbjct:   34 PEDVQVKVLYCGLCHSDLHQVKNDL-GMSNYPLVPGHEVVGKVVEVG-ADVSKFKVGDTVGVGLLVGSCRNCGPCKREIEQYCNKKIWNCNDVYTDGKPTQGGFANSMVVDQNFVVKIPEGMAPEQAAPLLCAGITVYSPFNHFGFNQSGFRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRQEALEHLGAD---DYLVSSDTDKMQEA 241          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.093e-21
Identity = 69/222 (31.08%), Postives = 103/222 (46.40%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARP-GQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFKDHSDPEKFIKAIKDMCDGV 800
            P +V +++ Y G+CHTD+H  K D  A    P+V GHE  G +V +G   +T  KVG  VG   +   C  C  C+  +E  C++   S       G    G F  + V   + V  IPDG+  EQAAP+LCAGVTVY  L +   +                    + A AMG  V  I + D K++    + GAD ++   D +  ++   ++  + D V
Sbjct:   34 PEDVFIKIIYCGICHTDIHQIKNDLGAS-NYPMVPGHEVVGEVVEVGSD-VTKFKVGDCVGDGTIVGCCKTCRPCKADVEQYCNKKIWSYNDVYTDGKPTQGGFSGHMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLKEISGLRGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAIDHLGADAYLVSSDATQMQEAADSLDYIIDTV 253          
The following BLAST results are available for this feature:
BLAST of FC872427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CADH4_ORYSJ8.141e-2229.28Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
CADH2_PICAB8.141e-2231.98Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
ADHC_MYCTU8.141e-2236.55NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO8.141e-2236.55NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH_PINTA1.063e-2132.57Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA1.063e-2132.57Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH5_ARATH1.063e-2130.40Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
CADH_MEDSA1.389e-2133.00Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH2_TOBAC1.814e-2133.33Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH1_ARACO3.093e-2131.08Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872427 ID=FC872427; Name=FC872427; organism=Citrus clementina; type=EST; length=823bp
GGGGACTCTCTCTTTCTCTCACCAACAACTCTACAGCAATCAAAACTATG
TCACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGA
CCACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGG
CTGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTA
TGCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCG
TCTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCG
GAGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAA
TGGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGA
GGCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTT
TCCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGAC
GGATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGT
CTATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCA
TTGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCC
GCCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAA
ACTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCAAGGATCACT
CGGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGTGCGATGGCGTA
GGACCTCACGCTGCTGTAGTTGC
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