FC872427

Overview
NameFC872427
Unique NameFC872427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length823
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9949 contig Ccv1_Contig9949:1..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH1_EUCGU (Probable cinnamyl alcohol dehydrogenase 1 OS=Eucalyptus gunnii GN=CAD1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.300e-19
Identity = 64/205 (31.22%), Postives = 90/205 (43.90%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ-------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFKDHS 752
            P ++ ++V   G+CH+D+H  K D       P+V GHE  G ++ +G   +T  +VG  VG   +   C  C  C    E  C++           G    G F    V   R V  IPDGL  EQAAP++CAGVTVYR L+    +                   + A AMG  V  I + D KR     + GAD ++   D +
Sbjct:   34 PEDLYIKVLSCGICHSDIHQIKNDL-GMSHYPMVPGHEVVGEVLEVGS-EVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYRPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDEN 236          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.697e-19
Identity = 68/219 (31.05%), Postives = 99/219 (45.21%), Query Frame = 3
Query:  168 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGV 800
            +V+++V Y G+CHTDLH  K    A  + P+V GHE  G +V +G   ++   VG  VG+  +   C DC  C+  +E  C++   S       G    G F    V   + V  IP GL  EQAAP+LCAGVTVY  L +                       + A +MG  V  I + D KR +     GAD ++   D +     + ++  + D V
Sbjct:   37 DVVLKVLYCGICHTDLHQTKNHLGAS-KYPMVPGHEVVGEVVEVGP-EVSKYSVGDVVGVGVIVGCCRDCRPCKANVEQYCNKKIWSYNDVYTDGKPTQGGFAGSMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLMTPGLRGGILGLGGVGHMGVKVAKSMGHHVTVISSSDKKRAEAMDDLGADDYLVSSDEAQMAAAMDSLDYIIDTV 253          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.697e-19
Identity = 66/206 (32.04%), Postives = 91/206 (44.17%), Query Frame = 3
Query:  168 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGY-SVD-------GTFQQYAVSYARHVTPIPD--------GLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFV 734
            +V ++V Y G+CH+DLH  K +W      P+V GHE  G +  +G   +   K G  VG+  + ++C  CE+CR+G E  CS      Y SVD       G +    V   R V   P          LPL+  AP+LCAGVTVY  +                         ++A A G+RV  I T   KR +     GAD F+
Sbjct:   49 DVAIKVLYCGICHSDLHTIKNEW-RNAVYPVVAGHEITGVVTEVGKN-VARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVDRDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFI 252          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.895e-19
Identity = 67/203 (33.00%), Postives = 92/203 (45.32%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFKD 746
            P +V+V+V Y G+CHTD+H  K    A  + P+V GHE  G +V +G   +T   VG  VG+  +   C +C+ C+  +E  C++   S       G    G F    V   + V  IP GL  EQAAP+LCAGVTVY  L                         + A AMG  V  I +   KR     + GAD ++   D
Sbjct:   34 PEDVVVKVLYCGICHTDIHQAKNHLGAS-KYPMVPGHEVVGEVVEVGP-EVTKYGVGDVVGVGVIVGCCRECKPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVMKIPAGLAPEQAAPLLCAGVTVYSPLKAFGLTTPGLRGAILGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSD 234          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_SULAC (NAD-dependent alcohol dehydrogenase OS=Sulfolobus acidocaldarius GN=adh PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.895e-19
Identity = 72/223 (32.29%), Postives = 106/223 (47.53%), Query Frame = 3
Query:  165 GEVLVRVDYSGVCHTDLHAWKGD-----WPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGI-KWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYA-VSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAM-GLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFI--KAIKDMCDGVG 803
            G+VLV+VDY+GVCHTDL    G        +KP LPLV GHE AG +V +G G +   K    V I  W+ D    C  C+ G +  C   +  G +V+G + +Y  V   R++  + + L    A+P+ C+GVT YRAL  +   P +                Q A A+ G  +I +D  ++  KL  + GAD      D  +  K    + +  + D VG
Sbjct:   26 GQVLVKVDYAGVCHTDLSVRSGAIFNRISSSKPTLPLVIGHEIAGEVVELG-GNVEGFKKSDKVLIDPWIGDG--SCHYCKIGEDQYCDNPKWLGINVNGGYGEYVLVPDYRYMFKLRN-LSTSTASPLACSGVTAYRALRLANLDPSKSVMIIGAGGGLGSIAVQIAKAIHGSFIIGVDVSEEGLKLATNLGADYVTSKVDEEEVRKITTGRGVDAIIDFVG 244          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.781e-19
Identity = 63/219 (28.77%), Postives = 100/219 (45.66%), Query Frame = 3
Query:  168 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFKDHSDPEKFIKAIKDMCDGV 800
            +V ++V   G+CHTD+H  K D       P+V GHE  G ++ +G   ++   VG  VG+  +   C  C+ C   +E  C++   S       G    G F    +   + V  IP+G+ +EQAAP+LCAGVTVY  L +                       + A AMG  V  I + D K++    + GAD +V   D ++ ++   ++  + D V
Sbjct:   37 DVYIKVICCGICHTDIHQIKNDL-GMSNYPMVPGHEVVGEVLEVGSD-VSKFTVGDVVGVGVVVGCCGSCKPCSSELEQYCNKRIWSYNDVYTDGKPTQGGFADTMIVNQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLMASGLKGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKEEAIEHLGADDYVVSSDPAEMQRLADSLDYIIDTV 253          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.939e-19
Identity = 64/205 (31.22%), Postives = 89/205 (43.41%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ-------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFKDHS 752
            P ++ ++V   GVCH+D+H  K D       P+V GHE  G ++ +G   +T  +VG  VG   +   C  C  C    E  C++           G    G F    V   R V  IPDGL  EQAAP++CAGVTVY  L+    +                   + A AMG  V  I + D KR     + GAD ++   D +
Sbjct:   34 PEDLYIKVLSCGVCHSDIHQIKNDL-GMSHYPMVPGHEVVGEVLEVGS-EVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDEN 236          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.450e-19
Identity = 66/203 (32.51%), Postives = 91/203 (44.83%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFKD 746
            P +V+V+V Y G+CHTD+H  K    A  + P+V GHE  G +V +G   +    VG  VG+  +   C +C  C+  +E  C++   S       G    G F    V   + V  IP GL  EQAAP+LCAGVTVY  L +                       + A AMG  V  I +   KR     + GAD ++   D
Sbjct:   34 PEDVVVKVLYCGICHTDIHQAKNHLGAS-KYPMVPGHEVVGEVVEVGP-EVAKYGVGDVVGVGVIVGCCRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNPGLRGGILGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSD 234          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.450e-19
Identity = 63/205 (30.73%), Postives = 89/205 (43.41%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ-------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFKDHS 752
            P ++ ++V   G+CH+D+H  K D       P+V GHE  G ++ +G   +T  +VG  VG   +   C  C  C    E  C++           G    G F    V   R V  IPDGL  EQAAP++CAGVTVY  L+    +                   + A AMG  V  I + D KR     + GAD ++   D +
Sbjct:   34 PEDLYIKVLSCGICHSDIHQIKNDL-GMSHYPMVPGHEVVGEVLEVGS-EVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDEN 236          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.424e-19
Identity = 66/219 (30.14%), Postives = 100/219 (45.66%), Query Frame = 3
Query:  168 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSV--DGT-----FQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCAS-YGADKFVDFKDHSDPEKFIKAIKDMCDGV 800
            +V  +V Y G+CH+DLH  K +W      P + GHE  G +  +G+  + N KVG  VG+  +  SC  CE+C   +E  C +   +  S   DGT     +    V        IPD + L+  AP+LCAGVTVY  L + +                     ++  A G +V  I T  +K+    +  GAD FV  +   +PE+   A+  + DG+
Sbjct:   40 DVTFKVLYCGICHSDLHYIKNEW-GNAVYPAIPGHEIVGVVTEVGN-KVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVISTSPNKKDEAVNRLGADSFVVSR---EPEQMQSAMGTL-DGI 252          
The following BLAST results are available for this feature:
BLAST of FC872427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CADH1_EUCGU1.300e-1931.22Probable cinnamyl alcohol dehydrogenase 1 OS=Eucal... [more]
CADH_LOLPR1.697e-1931.05Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
CADH7_ORYSJ1.697e-1932.04Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH_SACOF2.895e-1933.00Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
ADH_SULAC2.895e-1932.29NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
CADH4_ARATH3.781e-1928.77Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
CADH2_EUCGU4.939e-1931.22Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH_MAIZE6.450e-1932.51Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
CADH_EUCGL6.450e-1930.73Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
MTDH_MESCR8.424e-1930.14Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3AB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872427 ID=FC872427; Name=FC872427; organism=Citrus clementina; type=EST; length=823bp
GGGGACTCTCTCTTTCTCTCACCAACAACTCTACAGCAATCAAAACTATG
TCACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGA
CCACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGG
CTGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTA
TGCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCG
TCTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCG
GAGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAA
TGGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGA
GGCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTT
TCCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGAC
GGATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGT
CTATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCA
TTGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCC
GCCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAA
ACTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCAAGGATCACT
CGGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGTGCGATGGCGTA
GGACCTCACGCTGCTGTAGTTGC
back to top