FC872439

Overview
NameFC872439
Unique NameFC872439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length816
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.383e-11
Identity = 30/95 (31.58%), Postives = 58/95 (61.05%), Query Frame = 3 
Query:  306 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 590
            ++   + E++N+ L   K+ +   +  FTA WC PC+FI  +  EL+ +H  V  +K+D+D+  L +   + ++ A+PTF++ +  EK+ ++VGA
Sbjct:   13 VIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDE--LATVAQEFDVQAMPTFVYMKGEEKLDKVVGA 105
[Close]
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.337e-11
Identity = 36/108 (33.33%), Postives = 56/108 (51.85%), Query Frame = 3 
Query:  303 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 626
            N+    S E + S L +  D        FTA WCGPC+ I  V  ELS + P +   K+D+D+  L     + ++ A+PTF+F + G+ V ++VGA    L+  +  L
Sbjct:    5 NVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDE--LRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAAL 110
The following BLAST results are available for this feature:
BLAST of FC872439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TRXH1_BRANA6.383e-1131.58Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_PICMA8.337e-1133.33Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BF02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872439 ID=FC872439; Name=FC872439; organism=Citrus clementina; type=EST; length=816bp
GGGGGCCCGCAGCGGCACCGCTCCCAAAAACCCTAACGAAGAAGAGAGGT
GAATTTGCAGAGAAAATGAGAGGAAGTTCTTCAGTTATTTTGCGTCGATT
ACTTGTTCGACGCCAAGTCTTAAATCCCAATTCTACTAATATTGCAAAAT
CACTAATTTCGCATTCTACAAACAACACTACTGTTCCCAAGATACCCTCG
TTCCGTAATTATATTCCTGCTAGCTCCTCGCAATCACAGTCACAGATGCT
TCCTTCTCTTCAATTCCACAGAACTCTGTTCTCATCCCCAGATGGTCCAT
CAAATATTCTAGTCATCGAGTCAGGGGAAGAGTTCAATAGCTCACTTGGC
AAAGTTAAAGATGATTCTCTGCCAGCGATATTTTATTTCACTGCTGCTTG
GTGTGGCCCCTGCAAGTTTATATGGCTTGTCATAGGGGAGTTGAGTGCAG
AACACCCTCATGTAACAACATATAAGATTGACATTGACCAGAAAGGACTT
GAAAGCACATTAAGCAAGTTAAACATCAGTGCTGTGCCAACATTCTTGTT
CTTTCAACATGGAGAAAAGGTGGCTGAAATAGTTGGTGCTGATGTCTCAC
GGTTGAAGACAACTATGGAACAACTTTACAAGAAGGATTGAATGAAGTAA
GGATACCTGATCAGATGAGCTTGTAAGATTTTCATGAGAGATTTTGGGAA
TGATGATGATATTTGTTTTCTGTGTCAGGTTAAAGAAAATCTTTGTATAC
AGTGTTATTGTGATTTATCCATAAATGATTTGTTTAAGCAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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