FC872457

Overview
NameFC872457
Unique NameFC872457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length951
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.800e-17
Identity = 46/154 (29.87%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  462 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVTDGMQDS 923
            F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+   Y+G+  + +G I Y G+   +Y+ L    + +  +DS
Sbjct:  238 FRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDS 380          

HSP 2 Score: 33.4982 bits (75), Expect = 7.800e-17
Identity = 12/25 (48.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:  323 LMGGVSAAVSKTAAAPIERVKLLIQ 397
            L GG++ AVS+T+ AP++R+K+++Q
Sbjct:  199 LAGGIAGAVSRTSTAPLDRLKIMMQ 223          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.318e-16
Identity = 46/154 (29.87%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  462 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVTDGMQDS 923
            F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+   Y+G+  + +G I Y G+   +Y+ L    + +  +DS
Sbjct:  238 FQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFVSG----SMAGATAQTFIYPMEVLKTRLA-------VGKTGQYSGMFDCAKKILKYEGMGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDS 380          

HSP 2 Score: 33.4982 bits (75), Expect = 1.318e-16
Identity = 13/25 (52.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:  323 LMGGVSAAVSKTAAAPIERVKLLIQ 397
            L GGV+ AVS+T+ AP++R+K+++Q
Sbjct:  199 LAGGVAGAVSRTSTAPLDRLKVMMQ 223          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.762e-16
Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  462 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVTDGMQDS 923
            F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA     AK G   Q++G+    KK LK +G    Y+G+  + +G I Y G+   +Y+ L    + +  +DS
Sbjct:  236 FRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFERFISG----SMAGATAQTFIYPMEVLKTRLA----VAKTG---QYSGIYGCAKKILKHEGFGAFYKGYIPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDS 378          

HSP 2 Score: 33.4982 bits (75), Expect = 3.762e-16
Identity = 13/25 (52.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:  323 LMGGVSAAVSKTAAAPIERVKLLIQ 397
            L GGV+ AVS+T+ AP++R+K+++Q
Sbjct:  199 LAGGVAGAVSRTSTAPLDRLKVMMQ 223          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.890e-16
Identity = 44/154 (28.57%), Postives = 75/154 (48.70%), Query Frame = 3
Query:  462 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVTDGMQDS 923
            F + +K+ G+ SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G    Y+G+  + +G I Y G+   +Y+ L    + +  +DS
Sbjct:  236 FRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDS 378          

HSP 2 Score: 33.113 bits (74), Expect = 4.890e-16
Identity = 12/25 (48.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:  323 LMGGVSAAVSKTAAAPIERVKLLIQ 397
            L GG++ AVS+T+ AP++R+K+++Q
Sbjct:  199 LAGGIAGAVSRTSTAPLDRLKVMMQ 223          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.355e-16
Identity = 44/150 (29.33%), Postives = 74/150 (49.33%), Query Frame = 3
Query:  474 VKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVTDGMQDS 923
            VK+ GI SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F                 +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI   Y+G+  + +G I Y G+   +Y++L    + +  +DS
Sbjct:  241 VKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFVAGSLAGATAQTS----IYPMEVLKTRLA-------VGRTGQYSGMFDCAKKIMQKEGIRAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNHAKDS 379          

HSP 2 Score: 32.7278 bits (73), Expect = 6.355e-16
Identity = 12/37 (32.43%), Postives = 25/37 (67.57%), Query Frame = 2
Query:  287 QKKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQ 397
            ++K    +    + GG++ AVS+T  AP++R+K+++Q
Sbjct:  187 EEKKTGQWWKQLMAGGMAGAVSRTGTAPLDRLKVMMQ 223          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.073e-15
Identity = 45/151 (29.80%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  474 VKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVTDGMQDS 923
            VK+ G+ SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+              +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI   Y+G+  + +G I Y G+   +Y++L    + +  +DS
Sbjct:  241 VKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS-----IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQKEGILAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNYAKDS 379          

HSP 2 Score: 33.113 bits (74), Expect = 1.073e-15
Identity = 13/37 (35.14%), Postives = 25/37 (67.57%), Query Frame = 2
Query:  287 QKKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQ 397
            ++K    +    L GG++ AVS+T  AP++R+K+++Q
Sbjct:  187 EEKKTGQWWKHLLAGGMAGAVSRTGTAPLDRLKVMMQ 223          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-15
Identity = 45/151 (29.80%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  474 VKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVTDGMQDS 923
            VK+ GI SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+              +Y ++  +TRLA        G   Q++G+ D  KK ++ +G+   Y+G+  + +G I Y G+   +Y++L    + +   DS
Sbjct:  241 VKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS-----IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQREGVRAFYKGYIPNILGIIPYAGIDLAIYETLKTFWLQNYATDS 379          

HSP 2 Score: 33.4982 bits (75), Expect = 1.395e-15
Identity = 13/37 (35.14%), Postives = 25/37 (67.57%), Query Frame = 2
Query:  287 QKKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQ 397
            ++K    +    L GG++ AVS+T  AP++R+K+++Q
Sbjct:  187 EEKKTGQWWKQLLAGGMAGAVSRTGTAPLDRLKVMMQ 223          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: S2542_XENTR (Solute carrier family 25 member 42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.018e-15
Identity = 41/140 (29.29%), Postives = 64/140 (45.71%), Query Frame = 3
Query:  468 RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSL 887
            RT  +EG LSLWRGN+A ++R  P  A+ F   + +K+L        G                       Y LD  R R+A   K         ++ +I V+ +  + +G+  LYRGF+ + +G I Y G+ F  Y++L
Sbjct:   82 RTYLNEGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALAGTTATIITYPLDLVRARMAVTPK-------EMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETL 214          

HSP 2 Score: 33.8834 bits (76), Expect = 4.018e-15
Identity = 15/37 (40.54%), Postives = 24/37 (64.86%), Query Frame = 2
Query:  293 KSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQKS 403
            K+  S L   + G ++ AV+KTA AP++R K++ Q S
Sbjct:   31 KNHKSILNSLMSGALAGAVAKTAVAPLDRTKIIFQVS 67          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC1_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.473e-14
Identity = 43/155 (27.74%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  462 FGRTVKDEGILSLWRGNTANVIRYFPTQALNF-AFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVTDGMQDS 923
            F + +K+ G+ SLWRGN  NVI+  P  A+ F A++ Y K L         + ++ AG+              +Y ++  +TRL       +K G  Q++G+ D  KK L+ +G+   Y+G+  + +G I Y G+   +Y++L    ++   +D+
Sbjct:  239 FKQMIKEGGVASLWRGNGVNVIKIAPETAIKFMAYEQYKKLLSKDGGKVQSHERFMAGSLAGATAQTA-----IYPMEVMKTRL-----TLRKTG--QYSGMFDCAKKILRKEGVKAFYKGYVPNILGIIPYAGIDLAVYETLKNTWLSHYAKDT 381          

HSP 2 Score: 31.9574 bits (71), Expect = 1.473e-14
Identity = 13/37 (35.14%), Postives = 24/37 (64.86%), Query Frame = 2
Query:  287 QKKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQ 397
            ++K+   +      GGV+ AVS+T  AP++R+K+ +Q
Sbjct:  188 EEKTTGMWWKQLAAGGVAGAVSRTGTAPLDRMKVFMQ 224          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 65.0846 bits (157), Expect = 1.933e-14
Identity = 49/162 (30.25%), Postives = 72/162 (44.44%), Query Frame = 3
Query:  432 SHPYK--GISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKT-LKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVT 905
            +H YK  G+        + EG L L++GN A +IR FP  A+ F   +++K L   K    G+  +  AG+               Y LD  R RLA   K     GE  + G+I  +K    K  G  G YRG   + +G   Y G+ F  + +L  VG++
Sbjct:   68 NHHYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHVHRLMAGSMAGMTAVIC-----TYPLDMVRVRLAFQVK-----GEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLS 219          

HSP 2 Score: 34.6538 bits (78), Expect = 1.933e-14
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  308 FLVDFLMGGVSAAVSKTAAAPIERVKLLIQ 397
            +L  FL GG++   +KT  AP++RVK+L+Q
Sbjct:   36 WLRSFLAGGIAGCCAKTTVAPLDRVKVLLQ 65          
The following BLAST results are available for this feature:
BLAST of FC872457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
SCMC1_HUMAN7.800e-1729.87Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_BOVIN1.318e-1629.87Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE3.762e-1630.52Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT4.890e-1628.57Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA6.355e-1629.33Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1A_XENLA1.073e-1529.80Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_XENTR1.395e-1529.80Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENTR4.018e-1529.29Solute carrier family 25 member 42 OS=Xenopus trop... [more]
SCMC1_DANRE1.473e-1427.74Calcium-binding mitochondrial carrier protein SCaM... [more]
GDC_HUMAN1.933e-1430.25Graves disease carrier protein OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AC12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872457 ID=FC872457; Name=FC872457; organism=Citrus clementina; type=EST; length=951bp
GGGGACATTACGGTGGTCCTCCACACTAGGCGACCTCCTCAGGTCACCAT
CTTCAGCTTGCAAACACGGCAGTTGGACCGTATCCATCCGTATTTTCAGA
AAAATGCAAGACCAGTCATACTTCATCTTCTGGGGGTCCTCCCCCAATCT
GTATGCCCACAACTACAGTGTGGGCAGAGTTCCTTCGTTAATAGAGGTTT
CACAGAATTCTTTTTGGGCAGCAAGTCAGAGGAACTGGCCTGGCACTTGT
GTCTCCTGGTTTCTCCTATATTCGTACAAGCTCCATCAGAAAAAAAGTCT
TTCTTCTTTTTTGGTGGATTTTCTCATGGGAGGAGTTTCAGCAGCTGTTT
CCAAGACTGCAGCTGCTCCTATTGAGCGGGTTAAGCTTTTGATTCAGAAA
TCAAGATGAGATGATCAAGAGTGGTCGGCTCTCGCATCCGTACAAGGGGA
TTTCTGATTGCTTTGGTAGAACTGTTAAGGATGAAGGCATACTATCTCTT
TGGAGAGGCAACACTGCCAATGTTATCAGATACTTCCCTACCCAGGCCCT
GAACTTTGCATTCAAGGATTACTTTAAGAGGCTGTTTAACTTCAAGAAAG
ACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAACTTGGCATCTGGTGGG
GCTGCTGGTGCTTCATCGCTTCTTTTTGTGTATTCGCTTGACTATGCAAG
AACACGTTTGGCAAATGATGCTAAGGCAGCTAAAAAGGGTGGGGAAAGGC
AGTTTAATGGTTTGATTGATGTCTACAAGAAGACTCTGAAATCTGATGGC
ATTGCTGGGCTCTACCGTGGATTCAGCATCTCATGTGTTGGAAATATAGT
GTATCGTGGGCTCTACTTTGGAATGTACGATTCTCTAAACCCTGTGGGTG
TGACTGATGGGATGCAGGATAGTTTCTTGGCTAGCTTCTTACTTGGCTGG
G
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